Comparative genome analysis of Bacillus cereus group genomes with Bacillus subtilis

被引:70
作者
Anderson, I
Sorokin, A
Kapatral, V
Reznik, G
Bhattacharya, A
Mikhailova, N
Burd, H
Joukov, V
Kaznadzey, D
Walunas, T
D'Souza, M
Larsen, N
Pusch, G
Liolios, K
Grechkin, Y
Lapidus, A
Goltsman, E
Chu, L
Fonstein, M
Ehrlich, SD
Overbeek, R
Kyrpides, N
Ivanova, N
机构
[1] Integrated Genomics, Chicago, IL 60612 USA
[2] INRA, CRJ, F-78352 Jouy En Josas, France
关键词
comparative genomics; Bacillus cereus group; B; subtilis;
D O I
10.1016/j.femsle.2005.07.008
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Genome features of the Bacillus cereus group genomes (representative strains of Bacillus cereus, Bacillus anthracis and Bacillus thuringiensis sub spp. israelensis) were analyzed and compared with the Bacillus subtilis genome. A core set of 1381 protein families among the four Bacillus genomes, with an additional set of 933 families common to the B. cereus group, was identified. Differences in signal transduction pathways, membrane transporters, cell surface structures, cell wall, and S-layer proteins suggesting differences in their phenotype were identified. The B. cereus group has signal transduction systems including a tyrosine kinase related to two-component system histidine kinases from B subtilis. A model for regulation of the stress responsive sigma factor sigma(B) in the B. cereus group different from the well studied regulation in B. subtilis has been proposed. Despite a high degree of chromosomal synteny among these genomes, significant differences in cell wall and spore coat proteins that contribute to the survival and adaptation in specific hosts has been identified. (c) 2005 Federation of European Microbiological Societies. Published by Elsevier B.V. All rights reserved.
引用
收藏
页码:175 / 184
页数:10
相关论文
共 52 条
[1]   COMPLETE NUCLEOTIDE-SEQUENCE OF THE BACILLUS-THURINGIENSIS SUBSP ISRAELENSIS PLASMID PTX14-3 AND ITS CORRELATION WITH BIOLOGICAL PROPERTIES [J].
ANDRUP, L ;
DAMGAARD, J ;
WASSERMANN, K ;
BOE, L ;
MADSEN, SM ;
HANSEN, FG .
PLASMID, 1994, 31 (01) :72-88
[2]   Insights into the mechanism of catalysis by the P-C bond-cleaving enzyme phosphonoacetaldehyde hydrolase derived from gene sequence analysis and mutagenesis [J].
Baker, AS ;
Ciocci, MJ ;
Metcalf, WW ;
Kim, J ;
Babbitt, PC ;
Wanner, BL ;
Martin, BM ;
Dunaway-Mariano, D .
BIOCHEMISTRY, 1998, 37 (26) :9305-9315
[3]   Complete sequence and organization of pBtoxis, the toxin-coding plasmid of Bacillus thuringiensis subsp israelensis [J].
Berry, C ;
O'Neil, S ;
Ben-Dov, E ;
Jones, AF ;
Murphy, L ;
Quail, MA ;
Holden, MTG ;
Harris, D ;
Zaritsky, A ;
Parkhill, J .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2002, 68 (10) :5082-5095
[4]   Draft sequencing and comparative genomics of Xylella fastidiosa strains reveal novel biological insights [J].
Bhattacharyya, A ;
Stilwagen, S ;
Reznik, G ;
Feil, H ;
Feil, WS ;
Anderson, I ;
Bernal, A ;
D'Souza, M ;
Ivanova, N ;
Kapatral, V ;
Larsen, N ;
Los, T ;
Lykidis, A ;
Selkov, E ;
Walunas, TL ;
Purcell, A ;
Edwards, RA ;
Hawkins, T ;
Haselkorn, R ;
Overbeek, R ;
Kyrpides, NC ;
Predki, PF .
GENOME RESEARCH, 2002, 12 (10) :1556-1563
[5]   MOLECULAR CHARACTERIZATION OF 2 NOVEL CRYSTAL PROTEIN GENES FROM BACILLUS-THURINGIENSIS SUBSP THOMPSONI [J].
BROWN, KL ;
WHITELEY, HR .
JOURNAL OF BACTERIOLOGY, 1992, 174 (02) :549-557
[6]   Evidence that the cell wall of Bacillus subtilis is protonated during respiration [J].
Calamita, HG ;
Ehringer, WD ;
Koch, AL ;
Doyle, RJ .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2001, 98 (26) :15260-15263
[7]   Anionic polymers of Bacillus subtilis cell wall modulate the folding rate of secreted proteins [J].
Chambert, R ;
Petit-Glatron, MF .
FEMS MICROBIOLOGY LETTERS, 1999, 179 (01) :43-47
[8]   Mechanistic analysis of a type II polyketide synthase.: Role of conserved residues in the β-ketoacyl synthase-chain length factor heterodimer [J].
Dreier, J ;
Khosla, C .
BIOCHEMISTRY, 2000, 39 (08) :2088-2095
[9]  
Driks A, 1999, MICROBIOL MOL BIOL R, V63, P1
[10]   INTERACTIONS BETWEEN A BACILLUS-SUBTILIS ANTI-SIGMA FACTOR (RSBW) AND ITS ANTAGONIST (RSBV) [J].
DUFOUR, A ;
HALDENWANG, WG .
JOURNAL OF BACTERIOLOGY, 1994, 176 (07) :1813-1820