Sequencing the fungal tree of life

被引:70
作者
Martin, F. [1 ]
Cullen, D. [2 ]
Hibbett, D. [3 ]
Pisabarro, A. [4 ]
Spatafora, J. W. [5 ]
Baker, S. E. [6 ,7 ]
Grigoriev, I. V. [7 ]
机构
[1] INRA Nancy, UMR INRA, UHP 1136, F-54280 Champenoux, France
[2] USDA, Forest Prod Lab, Madison, WI USA
[3] Clark Univ, Worcester, MA 01610 USA
[4] Univ Publ Navarra, Dept Agr Prod, Pamplona 31006, Spain
[5] Oregon State Univ, Dept Bot & Plant Pathol, Corvallis, OR 97331 USA
[6] Pacific NW Natl Lab, Chem & Biol Proc Dev Grp, Richland, WA 99352 USA
[7] US DOE, Joint Genome Inst, Walnut Creek, CA USA
关键词
comparative genomics; DNA sequencing; energy and environment; fungal genomics; fungal tree of life; meta-genomics (-transcriptomics); mycorrhiza; saprotophs; GENOME SEQUENCE; FOREST; ECTOMYCORRHIZAS; COMMUNITIES; MECHANISMS; SYMBIOSIS; INSIGHTS; REVEAL; SOIL;
D O I
10.1111/j.1469-8137.2011.03688.x
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
引用
收藏
页码:818 / 821
页数:4
相关论文
共 19 条
[1]   Research coordination networks: a phylogeny for kingdom Fungi (Deep Hypha) [J].
Blackwell, Meredith ;
Hibbett, David S. ;
Taylor, John W. ;
Spatafora, Joseph W. .
MYCOLOGIA, 2006, 98 (06) :829-837
[2]   454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity [J].
Buee, M. ;
Reich, M. ;
Murat, C. ;
Morin, E. ;
Nilsson, R. H. ;
Uroz, S. ;
Martin, F. .
NEW PHYTOLOGIST, 2009, 184 (02) :449-456
[3]   Gene Transcription in Lactarius quietus-Quercus petraea Ectomycorrhizas from a Forest Soil [J].
Courty, P. E. ;
Poletto, M. ;
Duchaussoy, F. ;
Buee, M. ;
Garbaye, J. ;
Martin, F. .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2008, 74 (21) :6598-6605
[4]   THE FUNGAL GENOME INITIATIVE AND LESSONS LEARNED FROM GENOME SEQUENCING [J].
Cuomo, Christina A. ;
Birren, Bruce W. .
METHODS IN ENZYMOLOGY, VOL 470: GUIDE TO YEAST GENETICS:: FUNCTIONAL GENOMICS, PROTEOMICS, AND OTHER SYSTEMS ANALYSIS, 2ND EDITION, 2010, 470 :833-855
[5]  
GRIGORIEV IV, 2011, MYCOLOGY IN PRESS
[6]   Massively parallel 454-sequencing of fungal communities in Quercus spp. ectomycorrhizas indicates seasonal dynamics in urban and rural sites [J].
Jumpponen, Ari ;
Jones, Kenneth L. ;
Mattox, David ;
Yaege, Chulee .
MOLECULAR ECOLOGY, 2010, 19 :41-53
[7]   Fifteen years of microbial genomics: meeting the challenges and fulfilling the dream [J].
Kyrpides, Nikos C. .
NATURE BIOTECHNOLOGY, 2009, 27 (07) :627-632
[8]   The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis [J].
Martin, F. ;
Aerts, A. ;
Ahren, D. ;
Brun, A. ;
Danchin, E. G. J. ;
Duchaussoy, F. ;
Gibon, J. ;
Kohler, A. ;
Lindquist, E. ;
Pereda, V. ;
Salamov, A. ;
Shapiro, H. J. ;
Wuyts, J. ;
Blaudez, D. ;
Buee, M. ;
Brokstein, P. ;
Canback, B. ;
Cohen, D. ;
Courty, P. E. ;
Coutinho, P. M. ;
Delaruelle, C. ;
Detter, J. C. ;
Deveau, A. ;
DiFazio, S. ;
Duplessis, S. ;
Fraissinet-Tachet, L. ;
Lucic, E. ;
Frey-Klett, P. ;
Fourrey, C. ;
Feussner, I. ;
Gay, G. ;
Grimwood, J. ;
Hoegger, P. J. ;
Jain, P. ;
Kilaru, S. ;
Labbe, J. ;
Lin, Y. C. ;
Legue, V. ;
Le Tacon, F. ;
Marmeisse, R. ;
Melayah, D. ;
Montanini, B. ;
Muratet, M. ;
Nehls, U. ;
Niculita-Hirzel, H. ;
Oudot-Le Secq, M. P. ;
Peter, M. ;
Quesneville, H. ;
Rajashekar, B. ;
Reich, M. .
NATURE, 2008, 452 (7183) :88-U7
[9]   Perigord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis [J].
Martin, Francis ;
Kohler, Annegret ;
Murat, Claude ;
Balestrini, Raffaella ;
Coutinho, Pedro M. ;
Jaillon, Olivier ;
Montanini, Barbara ;
Morin, Emmanuelle ;
Noel, Benjamin ;
Percudani, Riccardo ;
Porcel, Bettina ;
Rubini, Andrea ;
Amicucci, Antonella ;
Amselem, Joelle ;
Anthouard, Veronique ;
Arcioni, Sergio ;
Artiguenave, Francois ;
Aury, Jean-Marc ;
Ballario, Paola ;
Bolchi, Angelo ;
Brenna, Andrea ;
Brun, Annick ;
Buee, Marc ;
Cantarel, Brandi ;
Chevalier, Gerard ;
Couloux, Arnaud ;
Da Silva, Corinne ;
Denoeud, France ;
Duplessis, Sebastien ;
Ghignone, Stefano ;
Hilselberger, Benoit ;
Iotti, Mirco ;
Marcais, Benoit ;
Mello, Antonietta ;
Miranda, Michele ;
Pacioni, Giovanni ;
Quesneville, Hadi ;
Riccioni, Claudia ;
Ruotolo, Roberta ;
Splivallo, Richard ;
Stocchi, Vilberto ;
Tisserant, Emilie ;
Viscomi, Arturo Roberto ;
Zambonelli, Alessandra ;
Zampieri, Elisa ;
Henrissat, Bernard ;
Lebrun, Marc-Henri ;
Paolocci, Francesco ;
Bonfante, Paola ;
Ottonello, Simone .
NATURE, 2010, 464 (7291) :1033-1038
[10]   Harnessing ectomycorrhizal genomics for ecological insights [J].
Martin, Francis ;
Nehls, Uwe .
CURRENT OPINION IN PLANT BIOLOGY, 2009, 12 (04) :508-515