Chemical Space of DNA-Encoded Libraries

被引:214
作者
Franzini, Raphael M. [1 ]
Randolph, Cassie [1 ]
机构
[1] Univ Utah, Coll Pharm, Dept Med Chem, 30 S 2000 E, Salt Lake City, UT 84112 USA
关键词
IN-VITRO; DRUG DISCOVERY; TEMPLATED SYNTHESIS; TRYPSIN-INHIBITORS; ORGANIC-SYNTHESIS; SMALL MOLECULES; HIGHLY POTENT; BINDING MODE; SELECTION; TECHNOLOGY;
D O I
10.1021/acs.jmedchem.5b01874
中图分类号
R914 [药物化学];
学科分类号
100701 ;
摘要
In recent years, DNA-encoded chemical libraries (DECLs) have attracted considerable attention as a potential discovery tool in drug development. Screening encoded libraries may offer advantages over conventional hit discovery approaches and has the potential to complement such methods in pharmaceutical research. As a result of the increased application of encoded libraries in drug discovery, a growing number of hit compounds are emerging in scientific literature. In this review we evaluate reported encoded library derived structures and identify general trends of these compounds in relation to library design parameters. We in particular emphasize the combinatorial nature of these libraries. Generally, the reported molecules demonstrate the ability of this technology to afford hits suitable for further lead development, and on the basis of them, we derive guidelines for DECL design.
引用
收藏
页码:6629 / 6644
页数:16
相关论文
共 101 条
[1]   Encoded Library Technology Screening of Hepatitis C Virus NS4B Yields a Small-Molecule Compound Series with In Vitro Replicon Activity [J].
Arico-Muendel, Christopher ;
Zhu, Zhengrong ;
Dickson, Hamilton ;
Parks, Derek ;
Keicher, Jesse ;
Deng, Jianghe ;
Aquilani, Leah ;
Coppo, Frank ;
Graybill, Todd ;
Lind, Kenneth ;
Peat, Andrew ;
Thomson, Michael .
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY, 2015, 59 (06) :3450-3459
[2]   Novel PTP1B inhibitors identified by DNA display of fragment pairs [J].
Barluenga, Sofia ;
Zambaldo, Claudio ;
Ioannidou, Heraklidia A. ;
Ciobanu, Mihai ;
Morieux, Pierre ;
Daguer, Jean-Pierre ;
Winssinger, Nicolas .
BIOORGANIC & MEDICINAL CHEMISTRY LETTERS, 2016, 26 (03) :1080-1085
[3]   PNA as a Biosupramolecular Tag for Programmable Assemblies and Reactions [J].
Barluenga, Sofia ;
Winssinger, Nicolas .
ACCOUNTS OF CHEMICAL RESEARCH, 2015, 48 (05) :1319-1331
[4]   Fidelity by design: Yoctoreactor and binder trap enrichment for small-molecule DNA-encoded libraries and drug discovery [J].
Blakskjaer, Peter ;
Heitner, Tara ;
Hansen, Nils Jakob Vest .
CURRENT OPINION IN CHEMICAL BIOLOGY, 2015, 26 :62-71
[5]   Discovery of a Class of Novel Tankyrase Inhibitors that Bind to Both the Nicotinamide Pocket and the Induced Pocket [J].
Bregman, Howard ;
Gunaydin, Hakan ;
Gu, Yan ;
Schneider, Steve ;
Wilson, Cindy ;
DiMauro, Erin F. ;
Huang, Xin .
JOURNAL OF MEDICINAL CHEMISTRY, 2013, 56 (03) :1341-1345
[6]   ENCODED COMBINATORIAL CHEMISTRY [J].
BRENNER, S ;
LERNER, RA .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1992, 89 (12) :5381-5383
[7]   Analysis of Past and Present Synthetic Methodologies on Medicinal Chemistry: Where Have All the New Reactions Gone? [J].
Brow, Dean G. ;
Bostrom, Jonas .
JOURNAL OF MEDICINAL CHEMISTRY, 2016, 59 (10) :4443-4458
[8]   Design and synthesis of a novel DNA-encoded chemical library using Diels-Alder cycloadditions [J].
Buller, Fabian ;
Mannocci, Luca ;
Zhang, Yixin ;
Dumelin, Christoph E. ;
Scheuermann, Joerg ;
Neri, Dario .
BIOORGANIC & MEDICINAL CHEMISTRY LETTERS, 2008, 18 (22) :5926-5931
[9]   Selection of Carbonic Anhydrase IX Inhibitors from One Million DNA-Encoded Compounds [J].
Buller, Fabian ;
Steiner, Martina ;
Frey, Katharina ;
Mircsof, Dennis ;
Scheuermann, Joerg ;
Kalisch, Markus ;
Buehlmann, Peter ;
Supuran, Claudiu T. ;
Neri, Dario .
ACS CHEMICAL BIOLOGY, 2011, 6 (04) :336-344
[10]   Discovery of TNF Inhibitors from a DNA-Encoded Chemical Library based on Diels-Alder Cycloaddition [J].
Buller, Fabian ;
Zhang, Yixin ;
Scheuermann, Joerg ;
Schaefer, Juliane ;
Buehlmann, Peter ;
Neri, Dario .
CHEMISTRY & BIOLOGY, 2009, 16 (10) :1075-1086