Novel PTP1B inhibitors identified by DNA display of fragment pairs

被引:35
作者
Barluenga, Sofia [1 ]
Zambaldo, Claudio [1 ]
Ioannidou, Heraklidia A. [2 ]
Ciobanu, Mihai [3 ]
Morieux, Pierre [4 ]
Daguer, Jean-Pierre [1 ]
Winssinger, Nicolas [1 ]
机构
[1] Univ Geneva, NCCR Chem Biol, Dept Organ Chem, CH-1211 Geneva 4, Switzerland
[2] Univ Nicosia, Dept Life & Hlth Sci, Nicosia, Cyprus
[3] Lonza AG, Visp, Switzerland
[4] PerkinElmer SAS, Villebon Sur Yvette, France
基金
瑞士国家科学基金会;
关键词
DNA-encoded library; Peptide nucleic acid (PNA); Fragment based drug discovery; PTP1B; TYROSINE-PHOSPHATASE; 1B; PEPTIDE NUCLEIC-ACID; ENCODED SYNTHESIS PES; PNA; LIBRARIES; SELECTION; DISCOVERY; LIGANDS; MOLECULES; CYSTEINE;
D O I
10.1016/j.bmcl.2015.11.102
中图分类号
R914 [药物化学];
学科分类号
100701 ;
摘要
DNA display of PNA-encoded libraries was used to pair fragments containing different phosphotyrosine surrogates with diverse triazoles. Microarray-based screening of the combinatorially paired fragment sets (62,500 combinations) against a prototypical phosphatase, PTP1B, was used to identify the fittest fragments. A focused library (10,000 members) covalently pairing identified fragments with linkers of different length and geometry was synthesized. Screening of the focused library against PTP1B and closely related TCPTP revealed orthogonal inhibitors. The selectivity of the identified inhibitors for PTP1B versus TCPT was confirmed by enzymatic inhibition assay. (C) 2015 Elsevier Ltd. All rights reserved.
引用
收藏
页码:1080 / 1085
页数:6
相关论文
共 70 条
[1]   DNA-Controlled Bivalent Presentation of Ligands for the Estrogen Receptor [J].
Abendroth, Frank ;
Bujotzek, Alexander ;
Shan, Min ;
Haag, Rainer ;
Weber, Marcus ;
Seitz, Oliver .
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2011, 50 (37) :8592-8596
[2]   Protein tyrosine phosphatases in the human genome [J].
Alonso, A ;
Sasin, J ;
Bottini, N ;
Friedberg, I ;
Friedberg, I ;
Osterman, A ;
Godzik, A ;
Hunter, T ;
Dixon, J ;
Mustelin, T .
CELL, 2004, 117 (06) :699-711
[3]   Structural and evolutionary relationships among protein tyrosine phosphatase domains [J].
Andersen, JN ;
Mortensen, OH ;
Peters, GH ;
Drake, PG ;
Iversen, LF ;
Olsen, OH ;
Jansen, PG ;
Andersen, HS ;
Tonks, NK ;
Moller, NPH .
MOLECULAR AND CELLULAR BIOLOGY, 2001, 21 (21) :7117-7136
[4]   Epithelial Protein-Tyrosine Phosphatase 1B Contributes to the Induction of Mammary Tumors by HER2/Neu but Is Not Essential for Tumor Maintenance [J].
Balavenkatraman, Kamal K. ;
Aceto, Nicola ;
Britschgi, Adrian ;
Mueller, Urs ;
Bence, Kendra K. ;
Neel, Benjamin G. ;
Bentires-Alj, Mohamed .
MOLECULAR CANCER RESEARCH, 2011, 9 (10) :1377-1384
[5]   PNA as a Biosupramolecular Tag for Programmable Assemblies and Reactions [J].
Barluenga, Sofia ;
Winssinger, Nicolas .
ACCOUNTS OF CHEMICAL RESEARCH, 2015, 48 (05) :1319-1331
[6]   Protein tyrosine phosphatases as drug targets: strategies and challenges of inhibitor development [J].
Barr, Alastair J. .
FUTURE MEDICINAL CHEMISTRY, 2010, 2 (10) :1563-1576
[7]   Protein-tyrosine phosphatase 1B is required for HER2/Neu-induced breast cancer [J].
Bentires-Alj, Mohamed ;
Neel, Benjamin G. .
CANCER RESEARCH, 2007, 67 (06) :2420-2424
[8]   Design and synthesis of a novel DNA-encoded chemical library using Diels-Alder cycloadditions [J].
Buller, Fabian ;
Mannocci, Luca ;
Zhang, Yixin ;
Dumelin, Christoph E. ;
Scheuermann, Joerg ;
Neri, Dario .
BIOORGANIC & MEDICINAL CHEMISTRY LETTERS, 2008, 18 (22) :5926-5931
[9]   A DNA-templated synthesis of encoded small molecules by DNA self-assembly [J].
Cao, Cheng ;
Zhao, Peng ;
Li, Ze ;
Chen, Zitian ;
Huang, Yanyi ;
Bai, Yu ;
Li, Xiaoyu .
CHEMICAL COMMUNICATIONS, 2014, 50 (75) :10997-10999
[10]   Novel selection methods for DNA-encoded chemical libraries [J].
Chan, Alix I. ;
McGregor, Lynn M. ;
Liu, David R. .
CURRENT OPINION IN CHEMICAL BIOLOGY, 2015, 26 :55-61