A radiation hybrid map of the rat genome containing 5,255 markers

被引:212
作者
Watanabe, TK
Bihoreau, MT
McCarthy, LC
Kiguwa, SL
Hishigaki, H
Tsuji, A
Browne, J
Yamasaki, Y
Mizoguchi-Miyakita, A
Oga, K
Ono, T
Okuno, S
Kanemoto, N
Takahashi, E
Tomita, K
Hayashi, H
Adachi, M
Webber, C
Davis, M
Kiel, S
Knights, C
Smith, A
Critcher, R
Miller, J
Thangarajah, T
Day, PJR
Hudson, JR
Irie, Y
Takagi, T
Nakamura, Y
Goodfellow, PN
Lathrop, GM
Tanigami, A
James, MR
机构
[1] Wellcome Trust Ctr Human Genet, Oxford OX3 7BN, England
[2] Otsuka Pharmaceut Co Ltd, Otsuka GEN Res Inst, Tokushima 7710192, Japan
[3] Univ Cambridge, Dept Genet, Cambridge CB2 3EH, England
[4] Res Genet Inc, Huntsville, AL 35801 USA
[5] Univ Tokyo, Inst Med Sci, Mol Med Lab, Minato Ku, Tokyo 108, Japan
基金
英国惠康基金;
关键词
D O I
10.1038/8737
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
A whole-genome radiation hybrid (RH) panel was used to construct a high-resolution map of the rat genome based on microsatellite and gene markers. These include 3,019 new microsatellite markers described here for the first time and 1,714 microsatellite markers with known genetic locations, allowing comparison and integration of maps from different sources. A robust RH framework map containing 1,030 positions ordered with odds of at least 1,000:1 has been defined as a tool for mapping these markers, and for future RH mapping in the rat, More than 500 genes which have been mapped in mouse and/or human were localized with respect to the rat RH framework, allowing the construction of detailed rat-mouse and rat-human comparative maps and illustrating the power of the RH approach for comparative mapping.
引用
收藏
页码:27 / 36
页数:10
相关论文
共 44 条
  • [1] Comparative genome organization of vertebrates
    Andersson, L
    Archibald, A
    Ashburner, M
    Audun, S
    Barendse, W
    Bitgood, J
    Bottema, C
    Broad, T
    Brown, S
    Burt, D
    Charlier, C
    Copeland, N
    Davis, S
    Davisson, M
    Edwards, J
    Eggen, A
    Elgar, G
    Eppig, JT
    Franklin, I
    Grewe, P
    Gill, T
    Graves, JAM
    Hawken, R
    Hetzel, J
    Hilyard, A
    Jacob, H
    Jaswinska, L
    Jenkins, N
    Kunz, H
    Levan, G
    Lie, O
    Lyons, L
    Maccarone, P
    Mellersh, C
    Montgomery, G
    Moore, S
    Moran, C
    Morizot, D
    Neff, M
    Nicholas, F
    OBrien, S
    Parsons, Y
    Peters, J
    Postlethwait, J
    Raymond, M
    Rothschild, M
    Schook, L
    Sugimoto, Y
    Szpirer, C
    Tate, M
    [J]. MAMMALIAN GENOME, 1996, 7 (10) : 717 - 734
  • [2] A linkage map of the rat genome derived from three F-2 crosses
    Bihoreau, MT
    Gauguier, D
    Kato, N
    Hyne, G
    Lindpaintner, K
    Rapp, JP
    James, MR
    Lathrop, GM
    [J]. GENOME RESEARCH, 1997, 7 (05): : 434 - 440
  • [3] Quantitative trait loci influencing cholesterol and phospholipid phenotypes map to chromosomes that contain genes regulating blood pressure in the spontaneously hypertensive rat
    Bottger, A
    vanLith, HA
    Kren, V
    Krenova, D
    Bila, V
    Vorlicek, J
    Zidek, V
    Musilova, A
    Zdobinska, M
    Wang, JM
    vanZutphen, BFM
    Kurtz, TW
    Pravenec, M
    [J]. JOURNAL OF CLINICAL INVESTIGATION, 1996, 98 (03) : 856 - 862
  • [4] Renal disease susceptibility and hypertension are under independent genetic control in the fawn-hooded rat
    Brown, DM
    Provoost, AP
    Daly, MJ
    Lander, ES
    Jacob, HJ
    [J]. NATURE GENETICS, 1996, 12 (01) : 44 - 51
  • [5] An integrated genetic linkage map of the laboratory rat
    Brown D.M.
    Matise T.C.
    Koike G.
    Simon J.S.
    Winer E.S.
    Zangen S.
    McLaughlin M.G.
    Shiozawa M.
    Atkinson O.S.
    Hudson Jr. J.R.
    Chakravarti A.
    Lander E.S.
    Jacob H.J.
    [J]. Mammalian Genome, 1998, 9 (7) : 521 - 530
  • [6] Construction and characterization of a 10-genome equivalent yeast artificial chromosome library for the laboratory rat, Rattus norvegicus
    Cai, L
    Schalkwyk, LC
    SchoeberleinStehli, A
    Zee, RYL
    Smith, A
    Haaf, T
    Georges, M
    Lehrach, H
    Lindpaintner, K
    [J]. GENOMICS, 1997, 39 (03) : 385 - 392
  • [7] Zooming in on the human-mouse comparative map: Genome conservation re-examined on a high-resolution scale
    Carver, EA
    Stubbs, L
    [J]. GENOME RESEARCH, 1997, 7 (12) : 1123 - 1137
  • [8] CATZELLIS FM, 1933, MAMMAL PHYLOGENY, P159
  • [9] RATES OF TRANSITION AND TRANSVERSION IN CODING SEQUENCES SINCE THE HUMAN-RODENT DIVERGENCE
    COLLINS, DW
    JUKES, TH
    [J]. GENOMICS, 1994, 20 (03) : 386 - 396
  • [10] DAY INM, 1995, BIOTECHNIQUES, V19, P830