Revised self-consistent continuum solvation in electronic-structure calculations

被引:428
作者
Andreussi, Oliviero [1 ,2 ]
Dabo, Ismaila [3 ]
Marzari, Nicola [2 ]
机构
[1] MIT, Dept Mat Sci & Engn, Cambridge, MA 02139 USA
[2] Ecole Polytech Fed Lausanne, Stn 12, CH-1015 Lausanne, Switzerland
[3] Univ Paris Est, Project Team INRIA Micmac, CERMICS, F-77455 Marne La Vallee, France
关键词
INITIO MOLECULAR-DYNAMICS; DENSITY-FUNCTIONAL THEORY; LIQUID WATER; VOLUME POLARIZATION; IONIC-SOLUTIONS; SIMULATIONS; FIELD; SURFACES; MODELS; GEPOL;
D O I
10.1063/1.3676407
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The solvation model proposed by Fattebert and Gygi [J. Comput. Chem. 23, 662 (2002)] and Scherlis et al. [J. Chem. Phys. 124, 074103 (2006)] is reformulated, overcoming some of the numerical limitations encountered and extending its range of applicability. We first recast the problem in terms of induced polarization charges that act as a direct mapping of the self-consistent continuum dielectric; this allows to define a functional form for the dielectric that is well behaved both in the high-density region of the nuclear charges and in the low-density region where the electronic wavefunctions decay into the solvent. Second, we outline an iterative procedure to solve the Poisson equation for the quantum fragment embedded in the solvent that does not require multigrid algorithms, is trivially parallel, and can be applied to any Bravais crystallographic system. Last, we capture some of the non-electrostatic or cavitation terms via a combined use of the quantum volume and quantum surface [M. Cococcioni, F. Mauri, G. Ceder, and N. Marzari, Phys. Rev. Lett. 94, 145501 (2005)] of the solute. The resulting self-consistent continuum solvation model provides a very effective and compact fit of computational and experimental data, whereby the static dielectric constant of the solvent and one parameter allow to fit the electrostatic energy provided by the polarizable continuum model with a mean absolute error of 0.3 kcal/mol on a set of 240 neutral solutes. Two parameters allow to fit experimental solvation energies on the same set with a mean absolute error of 1.3 kcal/mol. A detailed analysis of these results, broken down along different classes of chemical compounds, shows that several classes of organic compounds display very high accuracy, with solvation energies in error of 0.3-0.4 kcal/mol, whereby larger discrepancies are mostly limited to self-dissociating species and strong hydrogen-bond-forming compounds. (C) 2012 American Institute of Physics. [doi:10.1063/1.3676407]
引用
收藏
页数:20
相关论文
共 63 条
[41]   Theoretical methods for the description of the solvent effect in biomolecular systems [J].
Orozco, M ;
Luque, FJ .
CHEMICAL REVIEWS, 2000, 100 (11) :4187-4225
[42]   GEPOL - AN IMPROVED DESCRIPTION OF MOLECULAR-SURFACES .3. A NEW ALGORITHM FOR THE COMPUTATION OF A SOLVENT-EXCLUDING SURFACE [J].
PASCUALAHUIR, JL ;
SILLA, E ;
TUNON, I .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 1994, 15 (10) :1127-1138
[43]   GEPOL - AN IMPROVED DESCRIPTION OF MOLECULAR-SURFACES .1. BUILDING THE SPHERICAL SURFACE SET [J].
PASCUALAHUIR, JL ;
SILLA, E .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 1990, 11 (09) :1047-1060
[44]   Dynamical monopoles and dipoles in a condensed molecular system: The case of liquid water [J].
Pasquarello, A ;
Resta, R .
PHYSICAL REVIEW B, 2003, 68 (17)
[45]   CONVERGENCE ACCELERATION OF ITERATIVE SEQUENCES - THE CASE OF SCF ITERATION [J].
PULAY, P .
CHEMICAL PHYSICS LETTERS, 1980, 73 (02) :393-398
[46]   UFF, A FULL PERIODIC-TABLE FORCE-FIELD FOR MOLECULAR MECHANICS AND MOLECULAR-DYNAMICS SIMULATIONS [J].
RAPPE, AK ;
CASEWIT, CJ ;
COLWELL, KS ;
GODDARD, WA ;
SKIFF, WM .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1992, 114 (25) :10024-10035
[47]   First-principles molecular dynamics simulations at solid-liquid interfaces with a continuum solvent [J].
Sanchez, Veronica M. ;
Sued, Mariela ;
Scherlis, Damian A. .
JOURNAL OF CHEMICAL PHYSICS, 2009, 131 (17)
[48]   Continuous surface charge polarizable continuum models of solvation. I. General formalism [J].
Scalmani, Giovanni ;
Frisch, Michael J. .
JOURNAL OF CHEMICAL PHYSICS, 2010, 132 (11)
[49]   A unified electrostatic and cavitation model for first-principles molecular dynamics in solution [J].
Scherlis, DA ;
Fattebert, JL ;
Gygi, F ;
Cococcioni, M ;
Marzari, N .
JOURNAL OF CHEMICAL PHYSICS, 2006, 124 (07)
[50]   Ab initio molecular dynamics with a continuum solvation model [J].
Senn, HM ;
Margl, PM ;
Schmid, R ;
Ziegler, T ;
Blöchl, PE .
JOURNAL OF CHEMICAL PHYSICS, 2003, 118 (03) :1089-1100