Remediation of the protein data bank archive

被引：106

作者：

Henrick, Kim ^{[3
]}

Feng, Zukang ^{[1
]}

Bluhm, Wolfgang F. ^{[2
,6
]}

Dimitropoulos, Dimitris ^{[3
]}

Doreleijers, Jurgen F. ^{[4
]}

Dutta, Shuchismita ^{[1
]}

Flippen-Anderson, Judith L. ^{[1
]}

Ionides, John ^{[3
]}

Kamada, Chisa ^{[5
]}

Krissinel, Eugene ^{[3
]}

Lawson, Catherine L. ^{[1
]}

Markley, John L. ^{[4
]}

Nakamura, Haruki ^{[5
]}

Newman, Richard ^{[3
]}

Shimizu, Yukiko ^{[5
]}

Swaminathan, Jawahar ^{[3
]}

Velankar, Sameer ^{[3
]}

Ory, Jeramia ^{[1
]}

Ulrich, Eldon L. ^{[4
]}

Vranken, Wim ^{[3
]}

Westbrook, John ^{[1
]}

Yamashita, Reiko ^{[5
]}

Yang, Huanwang ^{[1
]}

Young, Jasmine ^{[1
]}

Yousufuddin, Muhammed ^{[1
]}

Berman, Helen M. ^{[1
]}

机构：

[1] State Univ New Jersey, Dept Chem & Chem Biol, RCSB Protien Data Bank, Piscataway, NJ 08854 USA

[2] Univ Calif San Diego, Skaggs Sch Pharm & Pharmaceut Sci, La Jolla, CA 92093 USA

[3] EMBL Outstn Hinxton, MSD EBI, Cambridge CB10 1SD, England

[4] Univ Wisconsin, Dept Biochem, BioMagResBank, Madison, WI 53706 USA

[5] Osaka Univ, Inst Prot Res, PDBj, Suita, Osaka 5650871, Japan

[6] Univ Calif San Diego, San Diego Supercomp Ctr, RCSB Protien Data Bank, La Jolla, CA 92093 USA

来源：

NUCLEIC ACIDS RESEARCH | 2008年 / 36卷

基金：

英国惠康基金;

关键词：

D O I：

10.1093/nar/gkm937

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

The Worldwide Protein Data Bank (wwPDB; wwpdb.org) is the international collaboration that manages the deposition, processing and distribution of the PDB archive. The online PDB archive at ftp://ftp.wwpdb.org is the repository for the coordinates and related information for more than 47 000 structures, including proteins, nucleic acids and large macromolecular complexes that have been determined using X-ray crystallography, NMR and electron microscopy techniques. The members of the wwPDBRCSB PDB (USA), MSD-EBI (Europe), PDBj (Japan) and BMRB (USA)have remediated this archive to address inconsistencies that have been introduced over the years. The scope and methods used in this project are presented.

引用

页码：D426 / D433

页数：8

共 43 条

[41]

Westbrook J., 2003, STRUCTURAL BIOINFORM, P161

[42]

Westbrook J., 2005, International Tables for Crystallography G. Definition and exchange of crystallographic data, P195

[43]

2006, OPEN BABEL PACKAGE V

← 1 2 3 4 5 →