Complete Genome Sequence of Clostridium acetobutylicum DSM 1731, a Solvent-Producing Strain with Multireplicon Genome Architecture

被引:31
作者
Bao, Guanhui [2 ]
Wang, Runjiang [2 ]
Zhu, Yan [2 ]
Dong, Hongjun [2 ]
Mao, Shaoming
Zhang, Yanping
Chen, Zugen [3 ]
Li, Yin [1 ]
Ma, Yanhe [1 ]
机构
[1] Chinese Acad Sci, Inst Microbiol, State Key Lab Microbial Resources, Beijing 100101, Peoples R China
[2] Chinese Acad Sci, Grad Sch, Beijing 100101, Peoples R China
[3] Univ Calif Los Angeles, Dept Human Genet, Sch Med, Los Angeles, CA 90095 USA
关键词
RNA GENES; TOLERANCE; PROGRAM;
D O I
10.1128/JB.05596-11
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Clostridium acetobutylicum is an important microorganism for solvent production. We report the complete genome sequence of C. acetobutylicum DSM 1731, a genome with multireplicon architecture. Comparison with the sequenced type strain C. acetobutylicum ATCC 824, the genome of strain DSM1731 harbors a 1.7-kb insertion and a novel 11.1-kb plasmid, which might have been acquired during evolution.
引用
收藏
页码:5007 / 5008
页数:2
相关论文
共 14 条
[1]   Systems-Level Metabolic Flux Profiling Elucidates a Complete, Bifurcated Tricarboxylic Acid Cycle in Clostridium acetobutylicum [J].
Amador-Noguez, Daniel ;
Feng, Xiao-Jiang ;
Fan, Jing ;
Roquet, Nathaniel ;
Rabitz, Herschel ;
Rabinowitz, Joshua D. .
JOURNAL OF BACTERIOLOGY, 2010, 192 (17) :4452-4461
[2]   THE ACETONE-BUTANOL-ETHANOL FERMENTATION [J].
AWANG, GM ;
JONES, GA ;
INGLEDEW, WM .
CRC CRITICAL REVIEWS IN MICROBIOLOGY, 1988, 15 :S33-S67
[3]   Improved microbial gene identification with GLIMMER [J].
Delcher, AL ;
Harmon, D ;
Kasif, S ;
White, O ;
Salzberg, SL .
NUCLEIC ACIDS RESEARCH, 1999, 27 (23) :4636-4641
[4]   Comparative genomic and transcriptomic analysis revealed genetic characteristics related to solvent formation and xylose utilization in Clostridium acetobutylicum EA 2018 [J].
Hu, Shiyuan ;
Zheng, Huajun ;
Gu, Yang ;
Zhao, Jingbo ;
Zhang, Weiwen ;
Yang, Yunliu ;
Wang, Shengyue ;
Zhao, Guoping ;
Yang, Sheng ;
Jiang, Weihong .
BMC GENOMICS, 2011, 12
[5]   Versatile and open software for comparing large genomes [J].
Kurtz, S ;
Phillippy, A ;
Delcher, AL ;
Smoot, M ;
Shumway, M ;
Antonescu, C ;
Salzberg, SL .
GENOME BIOLOGY, 2004, 5 (02)
[6]   RNAmmer:: consistent and rapid annotation of ribosomal RNA genes [J].
Lagesen, Karin ;
Hallin, Peter ;
Rodland, Einar Andreas ;
Stærfeldt, Hans-Henrik ;
Rognes, Torbjorn ;
Ussery, David W. .
NUCLEIC ACIDS RESEARCH, 2007, 35 (09) :3100-3108
[7]   tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence [J].
Lowe, TM ;
Eddy, SR .
NUCLEIC ACIDS RESEARCH, 1997, 25 (05) :955-964
[8]   GeneMark.hmm: new solutions for gene finding [J].
Lukashin, AV ;
Borodovsky, M .
NUCLEIC ACIDS RESEARCH, 1998, 26 (04) :1107-1115
[9]   Comparative analysis on the membrane proteome of Clostridium acetobutylicum wild type strain and its butanol-tolerant mutant [J].
Mao, Shaoming ;
Luo, Yuanming ;
Bao, Guanhui ;
Zhang, Yanping ;
Li, Yin ;
Ma, Yanhe .
MOLECULAR BIOSYSTEMS, 2011, 7 (05) :1660-1677
[10]   Proteome Reference Map and Comparative Proteomic Analysis between a Wild Type Clostridium acetobutylicum DSM 1731 and its Mutant with Enhanced Butanol Tolerance and Butanol Yield [J].
Mao, Shaoming ;
Luo, Yuanming ;
Zhang, Tianrui ;
Li, Jinshan ;
Bao, Guanhui ;
Zhu, Yan ;
Chen, Zugen ;
Zhang, Yanping ;
Li, Yin ;
Ma, Yanhe .
JOURNAL OF PROTEOME RESEARCH, 2010, 9 (06) :3046-3061