The limiting mobility of DNA sequencing fragments for both cross-linked and noncross-linked polymers in capillary electrophoresis: DNA sequencing at 1200 V cm(-1)

被引:35
作者
Yan, JY [1 ]
Best, N [1 ]
Zhang, JZ [1 ]
Ren, HJ [1 ]
Jiang, R [1 ]
Hou, J [1 ]
Dovichi, NJ [1 ]
机构
[1] UNIV ALBERTA,DEPT CHEM,EDMONTON,AB T6G 2G2,CANADA
关键词
capillary electrophoresis; DNA sequencing;
D O I
10.1002/elps.1150170611
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
The mobility of DNA sequencing fragments was measured in Long-Ranger gels at an electric field ranging from 200 to 1200 V cm(-1) and in noncross-linked polyacrylamide at electric fields ranging from 100 to 300 V cm(-1). In both cases, N* the fragment length that denotes the onset of biased reptation with orientation, is inversely proportional to electric field. The inverse dependence of N* is inconsistent with the original biased reptation model but is consistent with modern models of DNA migration. While separation speed increases dramatically with electric field, the number of bases determined in a separation decreases in proportion to field strength. We present a DNA sequencing run at an electric field of 1200 V cm(-1). Roughly 200 bases of sequence are determined in 3.5 min.
引用
收藏
页码:1037 / 1045
页数:9
相关论文
共 37 条
[21]   ACTIVATION-ENERGY OF SINGLE-STRANDED-DNA MOVING THROUGH CROSS-LINKED POLYACRYLAMIDE GELS AT 300-V/CM - EFFECT OF TEMPERATURE ON SEQUENCING RATE IN HIGH-ELECTRIC-FIELD CAPILLARY GEL-ELECTROPHORESIS [J].
LU, H ;
ARRIAGA, E ;
CHEN, DY ;
FIGEYS, D ;
DOVICHI, NJ .
JOURNAL OF CHROMATOGRAPHY A, 1994, 680 (02) :503-510
[22]   OPTIMIZATION OF ELECTRIC-FIELD STRENGTH FOR DNA-SEQUENCING IN CAPILLARY GEL-ELECTROPHORESIS [J].
LUCKEY, JA ;
SMITH, LM .
ANALYTICAL CHEMISTRY, 1993, 65 (20) :2841-2850
[23]   THEORY OF GEL-ELECTROPHORESIS OF DNA [J].
LUMPKIN, OJ ;
DEJARDIN, P ;
ZIMM, BH .
BIOPOLYMERS, 1985, 24 (08) :1573-1593
[24]   EFFECTS OF LINEAR POLYACRYLAMIDE CONCENTRATIONS AND APPLIED VOLTAGES ON THE SEPARATION OF OLIGONUCLEOTIDES AND DNA-SEQUENCING FRAGMENTS BY CAPILLARY ELECTROPHORESIS [J].
MANABE, T ;
CHEN, N ;
TERABE, S ;
YOHDA, M ;
ENDO, I .
ANALYTICAL CHEMISTRY, 1994, 66 (23) :4243-4252
[25]  
Mayer Pascal, 1993, Applied and Theoretical Electrophoresis, V3, P147
[26]   A SINGLE-FLUOR APPROACH TO DNA-SEQUENCE DETERMINATION USING HIGH-PERFORMANCE CAPILLARY ELECTROPHORESIS [J].
PENTONEY, SL ;
KONRAD, KD ;
KAYE, W .
ELECTROPHORESIS, 1992, 13 (08) :467-474
[27]   SEPARATION OF DNA SEQUENCING FRAGMENTS AT 53 BASES MINUTE BY CAPILLARY GEL-ELECTROPHORESIS [J].
ROCHELEAU, MJ ;
DOVICHI, NJ .
JOURNAL OF MICROCOLUMN SEPARATIONS, 1992, 4 (05) :449-453
[28]   FORMAMIDE MODIFIED POLYACRYLAMIDE GELS FOR DNA SEQUENCING BY CAPILLARY GEL-ELECTROPHORESIS [J].
ROCHELEAU, MJ ;
GREY, RJ ;
DA, YC ;
HARKE, HR ;
DOVICHI, NJ .
ELECTROPHORESIS, 1992, 13 (08) :484-486
[29]   DNA-SEQUENCING BY CAPILLARY ELECTROPHORESIS WITH REPLACEABLE LINEAR POLYACRYLAMIDE AND LASER-INDUCED FLUORESCENCE DETECTION [J].
RUIZMARTINEZ, MC ;
BERKA, J ;
BELENKII, A ;
FORET, F ;
MILLER, AW ;
KARGER, BL .
ANALYTICAL CHEMISTRY, 1993, 65 (20) :2851-2858
[30]  
Slater Gary W., 1994, Applied and Theoretical Electrophoresis, V4, P71