ORIOGEN: order restricted inference for ordered gene expression data

被引：47

作者：

Peddada, S ^{[1
]}

Harris, S

Zajd, J

Harvey, E

机构：

[1] Natl Inst Environm Hlth Sci, Biostat Branch, Durham, NC 27713 USA

[2] Constella Grp LLC, Durham, NC 27713 USA

来源：

BIOINFORMATICS | 2005年 / 21卷 / 20期

关键词：

D O I：

10.1093/bioinformatics/bti637

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

ORIOGEN is a user-friendly Java-based software package for selecting and clustering genes according to their profiles across various treatment groups. In particular, ORIOGEN is useful for analyzing data obtained from time-course or dose-response type experiments.

引用

页码：3933 / 3934

页数：2

共 3 条

[1] A random-periods model for expression of cell-cycle genes [J].

Liu, DL ;

Umbach, DM ;

Peddada, SD ;

Li, LP ;

Crockett, PW ;

Weinberg, CR .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2004, 101 (19) :7240-7245

[2] Gene selection and clustering for time-course and dose-response microarray experiments using order-restricted inference [J].

Peddada, SD ;

Lobenhofer, EK ;

Li, LP ;

Afshari, CA ;

Weinberg, CR ;

Umbach, DM .

BIOINFORMATICS, 2003, 19 (07) :834-841

[3] A direct approach to false discovery rates [J].

Storey, JD .

JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY, 2002, 64 :479-498

← 1 →