Idiographica: a general-purpose web application to build idiograms on-demand for human, mouse and rat

被引:55
作者
Kin, Taishin
Ono, Yukiteru
机构
[1] Natl Inst Adv Ind Sci & Technol, CBRC, Koto Ku, Tokyo 1350064, Japan
[2] Informat & Math Sci Lab Inc, Bunkyo Ku, Tokyo 1120012, Japan
关键词
D O I
10.1093/bioinformatics/btm455
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Summary: We have launched a web server, which serves as a general-purpose idiogram rendering service, and allows users to generate high-quality idiograms with custom annotation according to their own genome-wide mapping/annotation data through an easy-to-use interface. The generated idiograms are suitable not only for visualizing summaries of genome-wide analysis but also for many types of presentation material including web pages, conference posters, oral presentations, etc.
引用
收藏
页码:2945 / 2946
页数:2
相关论文
共 5 条
[1]   Ensembl 2007 [J].
Hubbard, T. J. P. ;
Aken, B. L. ;
Beal, K. ;
Ballester, B. ;
Caccamo, M. ;
Chen, Y. ;
Clarke, L. ;
Coates, G. ;
Cunningham, F. ;
Cutts, T. ;
Down, T. ;
Dyer, S. C. ;
Fitzgerald, S. ;
Fernandez-Banet, J. ;
Graf, S. ;
Haider, S. ;
Hammond, M. ;
Herrero, J. ;
Holland, R. ;
Howe, K. ;
Howe, K. ;
Johnson, N. ;
Kahari, A. ;
Keefe, D. ;
Kokocinski, F. ;
Kulesha, E. ;
Lawson, D. ;
Longden, I. ;
Melsopp, C. ;
Megy, K. ;
Meidl, P. ;
Overduin, B. ;
Parker, A. ;
Prlic, A. ;
Rice, S. ;
Rios, D. ;
Schuster, M. ;
Sealy, I. ;
Severin, J. ;
Slater, G. ;
Smedley, D. ;
Spudich, G. ;
Trevanion, S. ;
Vilella, A. ;
Vogel, J. ;
White, S. ;
Wood, M. ;
Cox, T. ;
Curwen, V. ;
Durbin, R. .
NUCLEIC ACIDS RESEARCH, 2007, 35 :D610-D617
[2]   Integrative annotation of 21,037 human genes validated by full-length cDNA clones [J].
Imanishi, T ;
Itoh, T ;
Suzuki, Y ;
O'Donovan, C ;
Fukuchi, S ;
Koyanagi, KO ;
Barrero, RA ;
Tamura, T ;
Yamaguchi-Kabata, Y ;
Tanino, M ;
Yura, K ;
Miyazaki, S ;
Ikeo, K ;
Homma, K ;
Kasprzyk, A ;
Nishikawa, T ;
Hirakawa, M ;
Thierry-Mieg, J ;
Thierry-Mieg, D ;
Ashurst, J ;
Jia, LB ;
Nakao, M ;
Thomas, MA ;
Mulder, N ;
Karavidopoulou, Y ;
Jin, LH ;
Kim, S ;
Yasuda, T ;
Lenhard, B ;
Eveno, E ;
Suzuki, Y ;
Yamasaki, C ;
Takeda, J ;
Gough, C ;
Hilton, P ;
Fujii, Y ;
Sakai, H ;
Tanaka, S ;
Amid, C ;
Bellgard, M ;
Bonaldo, MD ;
Bono, H ;
Bromberg, SK ;
Brookes, AJ ;
Bruford, E ;
Carninci, P ;
Chelala, C ;
Couillault, C ;
de Souza, SJ ;
Debily, MA .
PLOS BIOLOGY, 2004, 2 (06) :856-875
[3]   The UCSC Genome Browser Database: Update 2007 [J].
Kuhn, R. M. ;
Karolchik, D. ;
Zweig, A. S. ;
Trumbower, H. ;
Thomas, D. J. ;
Thakkapallayil, A. ;
Sugnet, C. W. ;
Stanke, M. ;
Smith, K. E. ;
Siepel, A. ;
Rosenbloom, K. R. ;
Rhead, B. ;
Raney, B. J. ;
Pohl, A. ;
Pedersen, J. S. ;
Hsu, F. ;
Hinrichs, A. S. ;
Harte, R. A. ;
Diekhans, M. ;
Clawson, H. ;
Bejerano, G. ;
Barber, G. P. ;
Baertsch, R. ;
Haussler, D. ;
Kent, W. J. .
NUCLEIC ACIDS RESEARCH, 2007, 35 :D668-D673
[4]   Automatic gene collection system for genome-scale overview of G-protein coupled receptors in Eukaryotes [J].
Ono, Y ;
Fujibuchi, W ;
Suwa, M .
GENE, 2005, 364 :63-73
[5]   Database resources of the National Center for Biotechnology Information [J].
Wheeler, David L. ;
Barrett, Tanya ;
Benson, Dennis A. ;
Bryant, Stephen H. ;
Canese, Kathi ;
Chetvernin, Vyacheslav ;
Church, Deanna M. ;
DiCuccio, Michael ;
Edgar, Ron ;
Federhen, Scott ;
Geer, Lewis Y. ;
Kapustin, Yuri ;
Khovayko, Oleg ;
Landsman, David ;
Lipman, David J. ;
Madden, Thomas L. ;
Maglott, Donna R. ;
Ostell, James ;
Miller, Vadim ;
Pruitt, Kim D. ;
Schuler, Gregory D. ;
Sequeira, Edwin ;
Sherry, Steven T. ;
Sirotkin, Karl ;
Souvorov, Alexandre ;
Starchenko, Grigory ;
Tatusov, Roman L. ;
Tatusova, Tatiana A. ;
Wagner, Lukas ;
Yaschenko, Eugene .
NUCLEIC ACIDS RESEARCH, 2007, 35 :D5-D12