Probing the Structure of Lysozyme-Carbon-Nanotube Hybrids with Molecular Dynamics

被引:83
作者
Calvaresi, Matteo [1 ]
Hoefinger, Siegfried [1 ]
Zerbetto, Francesco [1 ]
机构
[1] Univ Bologna, Dipartimento Chim G Ciamician, I-40126 Bologna, Italy
关键词
carbon; lysozyme; molecular dynamics; nanotechnology; nanotubes; solvation; EGG-WHITE LYSOZYME; PROTEINS; WATER; RECOGNITION; PEPTIDE; DOCKING; SURFACE; FUNCTIONALIZATION; THERAPEUTICS; DISPERSIONS;
D O I
10.1002/chem.201102703
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Lysozyme has been successfully used to solvate carbon nanotubes (CNT). Extensive molecular dynamics simulations show that 1) a favorite site of adsorption exists, 2) the proteintube interaction region is located far from the active site, 3) two protein helices act as a tweezer that grips the nanotube, 4) a localized protein re-arrangement hides the tube from the solvent, and 5) aminic and amidic moieties of lysozyme behave similarly to surfactants in the solvation of the tube.
引用
收藏
页码:4308 / 4313
页数:6
相关论文
共 69 条
[21]   Chemical and biochemical sensing with modified single walled carbon nanotubes [J].
Davis, JJ ;
Coleman, KS ;
Azamian, BR ;
Bagshaw, CB ;
Green, MLH .
CHEMISTRY-A EUROPEAN JOURNAL, 2003, 9 (16) :3732-3739
[22]   SWNT-amino acid interactions: A theoretical study [J].
de Leon, Aned ;
Jalbout, Abraham F. ;
Basiuk, Vladimir A. .
CHEMICAL PHYSICS LETTERS, 2008, 457 (1-3) :185-190
[23]   The isolation of basic proteins by solid-phase extraction with multiwalled carbon nanotubes [J].
Du, Zhuo ;
Yu, Yong-Liang ;
Chen, Xu-Wei ;
Wang, Jian-Hua .
CHEMISTRY-A EUROPEAN JOURNAL, 2007, 13 (34) :9679-9685
[24]   Probing diameter-selective solubilisation of carbon nanotubes by reversible cyclic peptides using molecular dynamics simulations [J].
Friling, S. R. ;
Notman, R. ;
Walsh, T. R. .
NANOSCALE, 2010, 2 (01) :98-106
[25]   Controlled Dispersion and Purification of Protein-Carbon Nanotube Conjugates Using Guanidine Hydrochloride [J].
Hirano, Atsushi ;
Maeda, Yutaka ;
Yuan, Xiaofei ;
Ueki, Ryuuichi ;
Miyazawa, Yosuke ;
Fujita, Jun-ichi ;
Akasaka, Takeshi ;
Shiraki, Kentaro .
CHEMISTRY-A EUROPEAN JOURNAL, 2010, 16 (40) :12221-12228
[26]   Quantification of Uptake and Localization of Bovine Serum Albumin-Stabilized Single-Wall Carbon Nanotubes in Different Human Cell Types [J].
Holt, Brian D. ;
Dahl, Kris Noel ;
Islam, Mohammad F. .
SMALL, 2011, 7 (16) :2348-2355
[27]   A helix-loop-helix peptide at the upper lip of the active site cleft of lysozyme confers potent antimicrobial activity with membrane permeabilization action [J].
Ibrahim, HR ;
Thomas, U ;
Pellegrini, A .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2001, 276 (47) :43767-43774
[28]   Probing the structure of DNA-carbon nanotube hybrids with molecular dynamics [J].
Johnson, Robert R. ;
Johnson, A. T. Charlie ;
Klein, Michael L. .
NANO LETTERS, 2008, 8 (01) :69-75
[29]   Computational Study of a Nanobiosensor: A Single-Walled Carbon Nanotube Functionalized with the Coxsackie-Adenovirus Receptor [J].
Johnson, Robert R. ;
Rego, Blake Jon ;
Johnson, A. T. Charlie ;
Klein, Michael L. .
JOURNAL OF PHYSICAL CHEMISTRY B, 2009, 113 (34) :11589-11593
[30]   Free Energy Landscape of a DNA-Carbon Nanotube Hybrid Using Replica Exchange Molecular Dynamics [J].
Johnson, Robert. R. ;
Kohlmeyer, Axel ;
Johnson, A. T. Charlie ;
Klein, Michael L. .
NANO LETTERS, 2009, 9 (02) :537-541