Phylogenetic reconstruction of intrapatient evolution of human immunodeficiency virus type 1:: predominance of drift and purifying selection

被引:19
作者
Kils-Hütten, L
Cheynier, R
Wain-Hobson, S
Meyerhans, A
机构
[1] Univ Saarlandes, Abt Virol, Inst Med Mikrobiol & Hyg, Klinikum Homburg, D-66421 Homburg, Germany
[2] Inst Pasteur, Unite Retrovirol Mol, F-75724 Paris 15, France
关键词
D O I
10.1099/0022-1317-82-7-1621
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
The intra-host evolution of 73 human immunodeficiency virus type 1 quasispecies was analysed by split decomposition analysis. Non-synonymous and synonymous nucleotide substitutions were counted along the shortest path connecting all sequences and compared with the numbers expected under the assumption of a random model of mutation. For the majority of substitutions, drift and negative selection seemed to prevail.
引用
收藏
页码:1621 / 1627
页数:7
相关论文
共 32 条
  • [1] GENOMIC VARIATION OF HUMAN-IMMUNODEFICIENCY-VIRUS TYPE-1 (HIV-1) - MOLECULAR ANALYSES OF HIV-1 IN SEQUENTIAL BLOOD-SAMPLES AND VARIOUS ORGANS OBTAINED AT AUTOPSY
    BALL, JK
    HOLMES, EC
    WHITWELL, H
    DESSELBERGER, U
    [J]. JOURNAL OF GENERAL VIROLOGY, 1994, 75 : 867 - 879
  • [2] Split Decomposition: A New and Useful Approach to Phylogenetic Analysis of Distance Data
    Bandelt, Hans-Juergen
    Dress, Andreas W. M.
    [J]. MOLECULAR PHYLOGENETICS AND EVOLUTION, 1992, 1 (03) : 242 - 252
  • [3] The molecular epidemiology of human immunodeficiency virus type 1 in six cities in Britain and Ireland
    Brown, AJL
    Lobidel, D
    Wade, CM
    Rebus, S
    Phillips, AN
    Brettle, RP
    France, AJ
    Leen, CS
    McMenamin, J
    McMillan, A
    Maw, RD
    Mulcahy, F
    Robertson, JR
    Sankar, KN
    Scott, G
    Wyld, R
    Peutherer, JF
    [J]. VIROLOGY, 1997, 235 (01) : 166 - 177
  • [4] Insertion/deletion frequencies match those of point mutations in the hypervariable regions of the simian immunodeficiency virus surface envelope gene
    Cheynier, R
    Kils-Hütten, L
    Meyerhans, A
    Wain-Hobson, S
    [J]. JOURNAL OF GENERAL VIROLOGY, 2001, 82 : 1613 - 1619
  • [5] EVOLUTION OF HUMAN-IMMUNODEFICIENCY-VIRUS TYPE-1 NEF AND LONG TERMINAL REPEAT SEQUENCES OVER 4 YEARS INVIVO AND INVITRO
    DELASSUS, S
    CHEYNIER, R
    WAINHOBSON, S
    [J]. JOURNAL OF VIROLOGY, 1991, 65 (01) : 225 - 231
  • [6] IN-VIVO DISTRIBUTION AND CYTOPATHOLOGY OF VARIANTS OF HUMAN-IMMUNODEFICIENCY-VIRUS TYPE-1 SHOWING RESTRICTED SEQUENCE VARIABILITY IN THE V3 LOOP
    DONALDSON, YK
    BELL, JE
    HOLMES, EC
    HUGHES, ES
    BROWN, HK
    SIMMONDS, P
    [J]. JOURNAL OF VIROLOGY, 1994, 68 (09) : 5991 - 6005
  • [7] SPLIT DECOMPOSITION - A TECHNIQUE TO ANALYZE VIRAL EVOLUTION
    DOPAZO, J
    DRESS, A
    VONHAESELER, A
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1993, 90 (21) : 10320 - 10324
  • [8] MOLECULAR CLOCK OF VIRAL EVOLUTION, AND THE NEUTRAL THEORY
    GOJOBORI, T
    MORIYAMA, EN
    KIMURA, M
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1990, 87 (24) : 10015 - 10018
  • [9] THE MOLECULAR EPIDEMIOLOGY OF HUMAN-IMMUNODEFICIENCY-VIRUS TYPE-1 IN EDINBURGH
    HOLMES, EC
    ZHANG, LQ
    ROBERTSON, P
    CLELAND, A
    HARVEY, E
    SIMMONDS, P
    BROWN, AJL
    [J]. JOURNAL OF INFECTIOUS DISEASES, 1995, 171 (01) : 45 - 53
  • [10] CONVERGENT AND DIVERGENT SEQUENCE EVOLUTION IN THE SURFACE ENVELOPE GLYCOPROTEIN OF HUMAN-IMMUNODEFICIENCY-VIRUS TYPE-1 WITHIN A SINGLE INFECTED PATIENT
    HOLMES, EC
    ZHANG, LQ
    SIMMONDS, P
    LUDLAM, CA
    BROWN, AJL
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1992, 89 (11) : 4835 - 4839