Network News: Innovations in 21st Century Systems Biology

被引:32
作者
Arkin, Adam P. [1 ,4 ]
Schaffer, David V. [1 ,2 ,3 ,4 ]
机构
[1] Univ Calif Berkeley, Dept Bioengn, Berkeley, CA 94720 USA
[2] Univ Calif Berkeley, Dept Chem & Biomol Engn, Berkeley, CA 94720 USA
[3] Univ Calif Berkeley, Helen Wills Neurosci Inst, Berkeley, CA 94720 USA
[4] EO Lawrence Berkeley Natl Lab, Phys Biosci Div, Berkeley, CA 94720 USA
基金
美国国家卫生研究院;
关键词
STOCHASTIC GENE-EXPRESSION; MOTIFS; GENOME; CELLS; STRATEGIES; DIVERSITY; PATHWAY; MODULE; MODEL; YEAST;
D O I
10.1016/j.cell.2011.03.008
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
A decade ago, seminal perspectives and papers set a strong vision for the field of systems biology, and a number of these themes have flourished. Here, we describe key technologies and insights that have elucidated the evolution, architecture, and function of cellular networks, ultimately leading to the first predictive genome-scale regulatory and metabolic models of organisms. Can systems approaches bridge the gap between correlative analysis and mechanistic insights?
引用
收藏
页码:844 / 849
页数:6
相关论文
共 55 条
[41]   Computational modeling of the dynamics of the MAP kinase cascade activated by surface and internalized EGF receptors [J].
Schoeberl, B ;
Eichler-Jonsson, C ;
Gilles, ED ;
Müller, G .
NATURE BIOTECHNOLOGY, 2002, 20 (04) :370-375
[42]   Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data [J].
Segal, E ;
Shapira, M ;
Regev, A ;
Pe'er, D ;
Botstein, D ;
Koller, D ;
Friedman, N .
NATURE GENETICS, 2003, 34 (02) :166-176
[43]   Modular epistasis in yeast metabolism [J].
Segrè, D ;
DeLuna, A ;
Church, GM ;
Kishony, R .
NATURE GENETICS, 2005, 37 (01) :77-83
[44]   Network motifs in the transcriptional regulation network of Escherichia coli [J].
Shen-Orr, SS ;
Milo, R ;
Mangan, S ;
Alon, U .
NATURE GENETICS, 2002, 31 (01) :64-68
[45]   Modularity of stress response evolution [J].
Singh, Amoolya H. ;
Wolf, Denise M. ;
Wang, Peggy ;
Arkin, Adam P. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2008, 105 (21) :7500-7505
[46]   The Bacillus subtilis sin operon:: An evolvable network motif [J].
Voigt, CA ;
Wolf, DM ;
Arkin, AP .
GENETICS, 2005, 169 (03) :1187-1202
[47]  
Waddington C.H., 1977, TOOLS FOR THOUGHT
[48]  
WADDINGTON CH, 1954, P 9 INT C GEN, V9, P232
[49]   Programming cells by multiplex genome engineering and accelerated evolution [J].
Wang, Harris H. ;
Isaacs, Farren J. ;
Carr, Peter A. ;
Sun, Zachary Z. ;
Xu, George ;
Forest, Craig R. ;
Church, George M. .
NATURE, 2009, 460 (7257) :894-U133
[50]   Rapid profiling of a microbial genome using mixtures of barcoded oligonucleotides [J].
Warner, Joseph R. ;
Reeder, Philippa J. ;
Karimpour-Fard, Anis ;
Woodruff, Lauren B. A. ;
Gill, Ryan T. .
NATURE BIOTECHNOLOGY, 2010, 28 (08) :856-U138