Pressure-based long-range correction for Lennard-Jones interactions in molecular dynamics simulations:: Application to alkanes and interfaces

被引:88
作者
Lagüe, P
Pastor, RW
Brooks, BR
机构
[1] NIH, Struct Biol Lab, Div Comp Res & Technol, Bethesda, MD 20892 USA
[2] US FDA, Biophys Lab, Ctr Biol Evaluat & Res, Rockville, MD 20852 USA
关键词
D O I
10.1021/jp030458y
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
A straightforward method that accounts for the long-range Lennard-Jones (LJ) terms in constant pressure molecular dynamics simulations is presented. This long-range correction (LRC) consists of an additional applied pressure tensor which is periodically calculated from the difference of instantaneous pressures at the selected cutoff and a very long cutoff. It provides results that are nearly independent of the LJ cutoff distance at negligible additional calculation costs, and is particularly suited for anisotropic systems such as liquid/ liquid interfaces or heterogeneous macromolecules where approximations based on spherically symmetric radial distribution functions are expected to fail. The utility of the method is demonstrated for a series of alkanes and water, and for interfaces including a lipid bilayer. The LRC increases densities and decreases isothermal compressibilities, with the changes larger for alkanes than for water (where the long-range interactions are dominated by electrostatic interactions). While implementation of the LRC will not necessarily improve agreement with a particular experiment, it will provide a baseline for improvements in a parameter set that are consistent with the long-range Lennard-Jones interactions.
引用
收藏
页码:363 / 368
页数:6
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