σ-hole bonding:: molecules containing group VI atoms

被引:464
作者
Murray, Jane S. [1 ]
Lane, Pat
Clark, Timothy
Politzer, Peter
机构
[1] Cleveland State Univ, Dept Chem, Cleveland, OH 44115 USA
[2] Univ New Orleans, Dept Chem, New Orleans, LA 70148 USA
[3] Univ Erlangen Nurnberg, Comp Chem Ctr, D-91052 Erlangen, Germany
关键词
directional noncovalent interactions; electrostatic potentials; group VI atoms; sigma-hole bonding;
D O I
10.1007/s00894-007-0225-4
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
It has been observed both experimentally and computationally that some divalently- bonded Group VI atoms interact in a noncovalent but highly directional manner with nucleophiles. We show that this can readily be explained in terms of regions of positive electrostatic potential on the outer surfaces of such atoms, these regions being located along the extensions of their existing covalent bonds. These positive regions can interact attractively with the lone pairs of nucleophiles. The existence of such a positive region is attributed to the presence of a "sigma-hole." This term designates the electron- deficient outer lobe of a half- filled p bonding orbital on the Group VI atom. The positive regions become stronger as the electronegativity of the atom decreases and its polarizability increases, and as the groups to which it is covalently bonded become more electron- withdrawing. We demonstrate computationally that the s- hole concept and the outer regions of positive electrostatic potential account for the existence, directionalities and strengths of the observed noncovalent interactions.
引用
收藏
页码:1033 / 1038
页数:6
相关论文
共 29 条
[21]  
POLITZER P, 2007, IN PRESS J MOL MOD
[22]  
POLITZER P, 1981, CHEMICAL APPL ATOMIC
[23]   An overview of halogen bonding [J].
Politzer, Peter ;
Lane, Pat ;
Concha, Monica C. ;
Ma, Yuguang ;
Murray, Jane S. .
JOURNAL OF MOLECULAR MODELING, 2007, 13 (02) :305-311
[24]   ANGULAR PREFERENCES OF INTERMOLECULAR FORCES AROUND HALOGEN CENTERS - PREFERRED DIRECTIONS OF APPROACH OF ELECTROPHILES AND NUCLEOPHILES AROUND THE CARBON HALOGEN BOND [J].
RAMASUBBU, N ;
PARTHASARATHY, R ;
MURRAYRUST, P .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1986, 108 (15) :4308-4314
[25]   NEW COUMARIN DYES WITH RIGIDIZED STRUCTURE FOR FLASHLAMP-PUMPED DYE LASERS [J].
REYNOLDS, GA ;
DREXHAGE, KH .
OPTICS COMMUNICATIONS, 1975, 13 (03) :222-225
[26]   Halogen bond in (CH3)nX (X = N, P, n = 3; X = S, n = 2) and (CH3)nXO (X = N, P, n = 3; X = S, n = 2) adducts with CF3I.: Structural and energy analysis including relativistic zero-order regular approximation approach in a density functional theory framework [J].
Romaniello, P ;
Lelj, F .
JOURNAL OF PHYSICAL CHEMISTRY A, 2002, 106 (39) :9114-9119
[27]   DIRECTIONAL PREFERENCES OF NONBONDED ATOMIC CONTACTS WITH DIVALENT SULFUR .1. ELECTROPHILES AND NUCLEOPHILES [J].
ROSENFIELD, RE ;
PARTHASARATHY, R ;
DUNITZ, JD .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1977, 99 (14) :4860-4862
[28]   VALENCE STRUCTURE FROM X-RAY-DIFFRACTION DATA - PHYSICAL PROPERTIES [J].
STEWART, RF .
JOURNAL OF CHEMICAL PHYSICS, 1972, 57 (04) :1664-&
[29]   Halogen bonding in fluoroalkylhalides: A quantum chemical study of increasing fluorine substitution [J].
Valerio, G ;
Raos, G ;
Meille, SV ;
Metrangolo, P ;
Resnati, G .
JOURNAL OF PHYSICAL CHEMISTRY A, 2000, 104 (08) :1617-1620