Complete genome sequence of Desulfomicrobium baculatum type strain (XT)

被引：35

作者：

Copeland, Alex ^{[1
]}

Spring, Stefan ^{[2
]}

Goeker, Markus ^{[2
]}

Schneider, Susanne ^{[2
]}

Lapidus, Alla ^{[1
]}

Del Rio, Tijana Glavina ^{[1
]}

Tice, Hope ^{[1
]}

Cheng, Jan-Fang ^{[1
]}

Lucas, Susan ^{[1
]}

Chen, Feng ^{[1
]}

Nolan, Matt ^{[1
]}

Bruce, David ^{[1
,3
]}

Goodwin, Lynne ^{[1
,3
]}

Pitluck, Sam ^{[1
]}

Ivanova, Natalia ^{[1
]}

Mavromatis, Konstantinos ^{[1
]}

Ovchinnikova, Galina ^{[1
]}

Pati, Amrita ^{[1
]}

Chen, Amy ^{[4
]}

Palaniappan, Krishna ^{[4
]}

Land, Miriam ^{[1
,5
]}

Hauser, Loren ^{[1
,5
]}

Chang, Yun-Juan ^{[1
,5
]}

Jeffries, Cynthia C. ^{[1
,5
]}

Meincke, Linda ^{[3
]}

Sims, David ^{[3
]}

Brettin, Thomas ^{[1
,3
]}

Detter, John C. ^{[1
,3
]}

Han, Cliff ^{[1
,3
]}

Chain, Patrick ^{[1
,6
]}

Bristow, Jim ^{[1
]}

Eisen, Jonathan A. ^{[1
,7
]}

Markowitz, Victor ^{[4
]}

Hugenholtz, Philip ^{[1
]}

Kyrpides, Nikos C. ^{[1
]}

Klenk, Hans-Peter ^{[2
]}

Lucas, Susan ^{[1
]}

机构：

[1] DOE Joint Genome Inst, Walnut Creek, CA USA

[2] DSMZ German Collect Microorganisms & Cell Culture, Braunschweig, Germany

[3] Los Alamos Natl Lab, Biosci Div, Los Alamos, NM USA

[4] Lawrence Berkeley Natl Lab, Biol Data Management & Technol Ctr, Berkeley, CA USA

[5] Oak Ridge Natl Lab, Oak Ridge, TN USA

[6] Lawrence Livermore Natl Lab, Livermore, CA USA

[7] Univ Calif Davis, Genome Ctr, Davis, CA 95616 USA

来源：

STANDARDS IN GENOMIC SCIENCES | 2009年 / 1卷 / 01期

关键词：

Sulfate reducer; Gram-negative; free-living; non-pathogenic; freshwater; anaerobe; mesophile; Desulfomicrobiaceae; SULFATE-REDUCING BACTERIA; SULFUR; REDUCTION; GROWTH;

D O I：

10.4056/sigs.13134

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

Desulfomicrobium baculatum is the type species of the genus Desulfomicrobium, which is the type genus of the family Desulfomicrobiaceae. It is of phylogenetic interest because of the isolated location of the family Desulfomicrobiaceae within the order Desulfovibrionales. D. baculatum strain X-T is a Gram-negative, motile, sulfate-reducing bacterium isolated from water-saturated manganese carbonate ore. It is strictly anaerobic and does not require NaCl for growth, although NaCl concentrations up to 6% (w/v) are tolerated. The metabolism is respiratory or fermentative. In the presence of sulfate, pyruvate and lactate are incompletely oxidized to acetate and CO2. Here we describe the features of this organism, together with the complete genome sequence and annotation. This is the first completed genome sequence of a member of the deltaproteobacterial family Desulfomicrobiaceae, and this 3,942,657 bp long single replicon genome with its 3494 protein-coding and 72 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

引用

页码：29 / 37

页数：9

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