Deep Sequencing of Patient Genomes for Disease Diagnosis: When Will It Become Routine?

被引:81
作者
Kingsmore, Stephen F. [1 ,2 ]
Saunders, Carol J. [2 ]
机构
[1] Natl Ctr Genome Resources, Santa Fe, NM 87505 USA
[2] Childrens Mercy Hosp, Kansas City, MO 64108 USA
关键词
MENTAL-RETARDATION; MUTATIONS; STANDARDS; CAPTURE; HEALTH; GENE;
D O I
10.1126/scitranslmed.3002695
中图分类号
Q2 [细胞生物学];
学科分类号
071013 [干细胞生物学];
摘要
Next-generation sequencing technologies have greatly lowered the cost of whole-genome sequencing (WGS) and related approaches. Thus, comprehensive sequencing for diagnostic purposes may clear this financial hurdle in the near future. The report by Bainbridge and colleagues in this issue of Science Translational Medicine illustrates the diagnostic power of WGS. In this Perspective, we discuss whether and how genome sequencing might become routine for clinical diagnosis.
引用
收藏
页数:4
相关论文
共 30 条
[1]
[Anonymous], MM9A NCCLS
[2]
Whole-Genome Sequencing for Optimized Patient Management [J].
Bainbridge, Matthew N. ;
Wiszniewski, Wojciech ;
Murdock, David R. ;
Friedman, Jennifer ;
Gonzaga-Jauregui, Claudia ;
Newsham, Irene ;
Reid, Jeffrey G. ;
Fink, John K. ;
Morgan, Margaret B. ;
Gingras, Marie-Claude ;
Muzny, Donna M. ;
Hoang, Linh D. ;
Yousaf, Shahed ;
Lupski, James R. ;
Gibbs, Richard A. .
SCIENCE TRANSLATIONAL MEDICINE, 2011, 3 (87)
[3]
Carrier Testing for Severe Childhood Recessive Diseases by Next-Generation Sequencing [J].
Bell, Callum J. ;
Dinwiddie, Darrell L. ;
Miller, Neil A. ;
Hateley, Shannon L. ;
Ganusova, Elena E. ;
Mudge, Joann ;
Langley, Ray J. ;
Zhang, Lu ;
Lee, Clarence C. ;
Schilkey, Faye D. ;
Sheth, Vrunda ;
Woodward, Jimmy E. ;
Peckham, Heather E. ;
Schroth, Gary P. ;
Kim, Ryan W. ;
Kingsmore, Stephen F. .
SCIENCE TRANSLATIONAL MEDICINE, 2011, 3 (65)
[4]
Whole-exome sequencing identifies recessive WDR62 mutations in severe brain malformations [J].
Bilguvar, Kaya ;
Ozturk, Ali Kemal ;
Louvi, Angeliki ;
Kwan, Kenneth Y. ;
Choi, Murim ;
Tatli, Burak ;
Yalnizoglu, Dilek ;
Tuysuz, Beyhan ;
Caglayan, Ahmet Okay ;
Gokben, Sarenur ;
Kaymakcalan, Hande ;
Barak, Tanyeri ;
Bakircioglu, Mehmet ;
Yasuno, Katsuhito ;
Ho, Winson ;
Sanders, Stephan ;
Zhu, Ying ;
Yilmaz, Sanem ;
Dincer, Alp ;
Johnson, Michele H. ;
Bronen, Richard A. ;
Kocer, Naci ;
Per, Hueseyin ;
Mane, Shrikant ;
Pamir, Mehmet Necmettin ;
Yalcinkaya, Cengiz ;
Kumandas, Sefer ;
Topcu, Meral ;
Ozmen, Meral ;
Sestan, Nenad ;
Lifton, Richard P. ;
State, Matthew W. ;
Gunel, Murat .
NATURE, 2010, 467 (7312) :207-U93
[5]
Whole-Exome-Sequencing-Based Discovery of Human FADD Deficiency [J].
Bolze, Alexandre ;
Byun, Minji ;
McDonald, David ;
Morgan, Neil V. ;
Abhyankar, Avinash ;
Premkumar, Lakshmanane ;
Puel, Anne ;
Bacon, Chris M. ;
Rieux-Laucat, Frederic ;
Pang, Ki ;
Britland, Alison ;
Abel, Laurent ;
Cant, Andrew ;
Maher, Eamonn R. ;
Riedl, Stefan J. ;
Hambleton, Sophie ;
Casanova, Jean-Laurent .
AMERICAN JOURNAL OF HUMAN GENETICS, 2010, 87 (06) :873-881
[6]
Exome sequencing reveals a novel mutation for autosomal recessive non-syndromic mental retardation in the TECR gene on chromosome 19p13 [J].
Caliskan, Minal ;
Chong, Jessica X. ;
Uricchio, Lawrence ;
Anderson, Rebecca ;
Chen, Peixian ;
Sougnez, Carrie ;
Garimella, Kiran ;
Gabriel, Stacey B. ;
DePristo, Mark A. ;
Shakir, Khalid ;
Matern, Dietrich ;
Das, Soma ;
Waggoner, Darrel ;
Nicolae, Dan L. ;
Ober, Carole .
HUMAN MOLECULAR GENETICS, 2011, 20 (07) :1285-1289
[7]
Genetic diagnosis by whole exome capture and massively parallel DNA sequencing [J].
Choi, Murim ;
Scholl, Ute I. ;
Ji, Weizhen ;
Liu, Tiewen ;
Tikhonova, Irina R. ;
Zumbo, Paul ;
Nayir, Ahmet ;
Bakkaloglu, Aysin ;
Ozen, Seza ;
Sanjad, Sami ;
Nelson-Williams, Carol ;
Farhi, Anita ;
Mane, Shrikant ;
Lifton, Richard P. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2009, 106 (45) :19096-19101
[8]
THE EFFECT OF MENDELIAN DISEASE ON HUMAN HEALTH - A MEASUREMENT [J].
COSTA, T ;
SCRIVER, CR ;
CHILDS, B .
AMERICAN JOURNAL OF MEDICAL GENETICS, 1985, 21 (02) :231-242
[9]
*GENETESTS, 1993, MED GEN INF RES DAT
[10]
Exome sequencing identifies ACAD9 mutations as a cause of complex I deficiency [J].
Haack, Tobias B. ;
Danhauser, Katharina ;
Haberberger, Birgit ;
Hoser, Jonathan ;
Strecker, Valentina ;
Boehm, Detlef ;
Uziel, Graziella ;
Lamantea, Eleonora ;
Invernizzi, Federica ;
Poulton, Joanna ;
Rolinski, Boris ;
Iuso, Arcangela ;
Biskup, Saskia ;
Schmidt, Thorsten ;
Mewes, Hans-Werner ;
Wittig, Ilka ;
Meitinger, Thomas ;
Zeviani, Massimo ;
Prokisch, Holger .
NATURE GENETICS, 2010, 42 (12) :1131-+