Cellular genomics for complex traits

被引:28
作者
Dermitzakis, Emmanouil T. [1 ,2 ]
机构
[1] Univ Geneva, Sch Med, Dept Genet Med & Dev, CH-1211 Geneva, Switzerland
[2] Inst Genet & Genom Geneva iGE3, Geneva, Switzerland
基金
瑞士国家科学基金会;
关键词
GENE-EXPRESSION VARIATION; MUTATIONS; CHROMATIN;
D O I
10.1038/nrg3115
中图分类号
Q3 [遗传学];
学科分类号
071007 [遗传学];
摘要
Recent developments in the collection and analysis of cellular multilayered data in large cohorts with extensive organismal phenotyping promise to reveal links between genetic variation and biological processes. The use of these cellular resources as models for human biology - known as 'cellular phenotyping' - is likely to transform our understanding of the genetic and long-term environmental influences on complex traits. I discuss the advantages and caveats of a deeper analysis of cellular phenotypes in large cohorts and assess the methodological advances, resource needs and prospects of this new approach.
引用
收藏
页码:215 / 220
页数:6
相关论文
共 35 条
[1]
DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines [J].
Bell, Jordana T. ;
Pai, Athma A. ;
Pickrell, Joseph K. ;
Gaffney, Daniel J. ;
Pique-Regi, Roger ;
Degner, Jacob F. ;
Gilad, Yoav ;
Pritchard, Jonathan K. .
GENOME BIOLOGY, 2011, 12 (01)
[2]
Bimodal Effect on Pancreatic β-Cells of Secretory Products From Normal or Insulin-Resistant Human Skeletal Muscle [J].
Bouzakri, Karim ;
Plomgaard, Peter ;
Berney, Thierry ;
Donath, Marc Y. ;
Pedersen, Bente Karlund ;
Halban, Philippe A. .
DIABETES, 2011, 60 (04) :1111-1121
[3]
The effects of EBV transformation on gene expression levels and methylation profiles [J].
Caliskan, Minal ;
Cusanovich, Darren A. ;
Ober, Carole ;
Gilad, Yoav .
HUMAN MOLECULAR GENETICS, 2011, 20 (08) :1643-1652
[4]
Mapping determinants of human gene expression by regional and genome-wide association [J].
Cheung, VG ;
Spielman, RS ;
Ewens, KG ;
Weber, TM ;
Morley, M ;
Burdick, JT .
NATURE, 2005, 437 (7063) :1365-1369
[5]
Genetic Analysis of Human Traits In Vitro: Drug Response and Gene Expression in Lymphoblastoid Cell Lines [J].
Choy, Edwin ;
Yelensky, Roman ;
Bonakdar, Sasha ;
Plenge, Robert M. ;
Saxena, Richa ;
De Jager, Philip L. ;
Shaw, Stanley Y. ;
Wolfish, Cara S. ;
Slavik, Jacqueline M. ;
Cotsapas, Chris ;
Rivas, Manuel ;
Dermitzakis, Emmanouil T. ;
Cahir-McFarland, Ellen ;
Kieff, Elliott ;
Hafler, David ;
Daly, Mark J. ;
Altshuler, David .
PLOS GENETICS, 2008, 4 (11)
[6]
From gene expression to disease risk [J].
Dermitzakis, Emmanouil T. .
NATURE GENETICS, 2008, 40 (05) :492-493
[7]
Genetic variation of regulatory systems [J].
Dimas, Antigone S. ;
Dermitzakis, Emmanouil T. .
CURRENT OPINION IN GENETICS & DEVELOPMENT, 2009, 19 (06) :586-590
[8]
Expression and alternative splicing of folate pathway genes in HapMap lymphoblastoid cell lines [J].
Duan, Shiwei ;
Huang, R. Stephanie ;
Zhang, Wei ;
Mi, Shuangli ;
Bleibel, Wasim K. ;
Kistner, Emily O. ;
Cox, Nancy J. ;
Dolan, M. Eileen .
PHARMACOGENOMICS, 2009, 10 (04) :549-563
[9]
Genetics of gene expression and its effect on disease [J].
Emilsson, Valur ;
Thorleifsson, Gudmar ;
Zhang, Bin ;
Leonardson, Amy S. ;
Zink, Florian ;
Zhu, Jun ;
Carlson, Sonia ;
Helgason, Agnar ;
Walters, G. Bragi ;
Gunnarsdottir, Steinunn ;
Mouy, Magali ;
Steinthorsdottir, Valgerdur ;
Eiriksdottir, Gudrun H. ;
Bjornsdottir, Gyda ;
Reynisdottir, Inga ;
Gudbjartsson, Daniel ;
Helgadottir, Anna ;
Jonasdottir, Aslaug ;
Jonasdottir, Adalbjorg ;
Styrkarsdottir, Unnur ;
Gretarsdottir, Solveig ;
Magnusson, Kristinn P. ;
Stefansson, Hreinn ;
Fossdal, Ragnheidur ;
Kristjansson, Kristleifur ;
Gislason, Hjortur G. ;
Stefansson, Tryggvi ;
Leifsson, Bjorn G. ;
Thorsteinsdottir, Unnur ;
Lamb, John R. ;
Gulcher, Jeffrey R. ;
Reitman, Marc L. ;
Kong, Augustine ;
Schadt, Eric E. ;
Stefansson, Kari .
NATURE, 2008, 452 (7186) :423-U2
[10]
Genetic basis of proteome variation in yeast [J].
Foss, Eric J. ;
Radulovic, Dragan ;
Shaffer, Scott A. ;
Ruderfer, Douglas M. ;
Bedalov, Antonio ;
Goodlett, David R. ;
Kruglyak, Leonid .
NATURE GENETICS, 2007, 39 (11) :1369-1375