Proteopedia: A status report on the collaborative, 3D web-encyclopedia of proteins and other biomolecules

被引：45

作者：

Prilusky, Jaime ^{[1
]}

Hodis, Eran ^{[2
]}

Canner, David ^{[3
,4
]}

Decatur, Wayne A. ^{[5
]}

Oberholser, Karl ^{[6
]}

Martz, Eric ^{[7
]}

Berchanski, Alexander ^{[3
,8
]}

Harel, Michal ^{[9
]}

Sussman, Joel L. ^{[3
,9
]}

机构：

[1] Weizmann Inst Sci, Biol Serv Unit, Bioinformat Unit, IL-76100 Rehovot, Israel

[2] Weizmann Inst Sci, Dept Comp Sci & Appl Math, IL-76100 Rehovot, Israel

[3] Weizmann Inst Sci, Biol Chem Fac, Israel Struct Prote Ctr, IL-76100 Rehovot, Israel

[4] Princeton Univ, Dept Chem, Princeton, NJ 08544 USA

[5] Univ New Hampshire, Dept Mol Cellular & Biomed Sci, Durham, NH 03824 USA

[6] Messiah Coll, Dept Chem & Biochem, Grantham, PA 17055 USA

[7] Univ Massachusetts, Dept Microbiol, Amherst, MA 01003 USA

[8] Weizmann Inst Sci, Dept Organ Chem, IL-76100 Rehovot, Israel

[9] Weizmann Inst Sci, Dept Biol Struct, IL-76100 Rehovot, Israel

来源：

JOURNAL OF STRUCTURAL BIOLOGY | 2011年 / 175卷 / 02期

关键词：

3D Molecular visualization; Wiki; Web-encyclopedia; Structure/function; MACROMOLECULAR MOTIONS; ENTRY; DATABASE;

D O I：

10.1016/j.jsb.2011.04.011

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

Proteopedia is a collaborative, 3D web-encyclopedia of protein, nucleic acid and other biomolecule structures. Created as a means for communicating biomolecule structures to a diverse scientific audience, Proteopedia (http://www.proteopedia.org) presents structural annotation in an intuitive, interactive format and allows members of the scientific community to easily contribute their own annotations. Here, we provide a status report on Proteopedia by describing advances in the web resource since its inception three and a half years ago, focusing on features of potential direct use to the scientific community. We discuss its progress as a collaborative 3D-encyclopedia of structures as well as its use as a complement to scientific publications and PowerPoint presentations. We also describe Proteopedia's use for 3D visualization in structure-related pedagogy. (C) 2011 Elsevier Inc. All rights reserved.

引用

页码：244 / 252

页数：9

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