The first RSBI (ISA-TAB) workshop: "Can a Simple Format Work for Complex Studies?"

被引：59

作者：

Sansone, Susanna-Assunta ^{[1
]}

Rocca-Serra, Philippe ^{[1
]}

Brandizi, Marco ^{[1
]}

Brazma, Alvis ^{[1
]}

Field, Dawn ^{[2
]}

Fostel, Jennifer ^{[3
]}

Garrow, Andrew G. ^{[4
]}

Gilbert, Jack ^{[5
]}

Goodsaid, Federico ^{[6
]}

Hardy, Nigel ^{[7
]}

Jones, Phil ^{[1
]}

Lister, Allyson ^{[8
,9
]}

Miller, Michael ^{[10
]}

Morrison, Norman ^{[2
,11
,12
]}

Rayner, Tim ^{[1
]}

Sklyar, Nataliya ^{[1
]}

Taylor, Chris ^{[1
]}

Tong, Weida ^{[13
]}

Warner, Guy ^{[4
]}

Wiemann, Stefan ^{[14
]}

机构：

[1] EMBL EBI, Cambridge CB10 1SD, England

[2] NERC, Ctr Ecol & Hydrol, Oxford OX1 3SR, England

[3] NIEHS, NIH, Res Triangle Pk, NC 27709 USA

[4] Unilever Safety & Environm Assurance Ctr, Bedford, England

[5] Plymouth Marine Lab, Plymouth, Devon, England

[6] US FDA, Off Clin Pharmacol, Off Translat Sci, Ctr Drug Evaluat & Res, Silver Spring, MD USA

[7] Aberystwyth Univ, Dept Comp Sci, Ceredigion, Wales

[8] Univ Newcastle, CISBAN, Newcastle Upon Tyne, Tyne & Wear, England

[9] Univ Newcastle, Sch Comp Sci, Newcastle Upon Tyne, Tyne & Wear, England

[10] Rosetta Biosoftware, Seattle, WA USA

[11] NERC, Bioinformat Ctr NEBC, Ctr Ecol & Hydrol, Oxford OX1 3SR, England

[12] Univ Manchester, Sch Comp Sci, Manchester, Lancs, England

[13] US FDA, Natl Ctr Toxicol Res, Ctr Toxicoinformat, Jefferson, AR 72079 USA

[14] German Canc Res Ctr, D-6900 Heidelberg, Germany

来源：

OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY | 2008年 / 12卷 / 02期

基金：

英国生物技术与生命科学研究理事会; 英国自然环境研究理事会;

关键词：

D O I：

10.1089/omi.2008.0019

中图分类号：

Q81 [生物工程学（生物技术）]; Q93 [微生物学];

学科分类号：

071005 ; 0836 ; 090102 ; 100705 ;

摘要：

This article summarizes the motivation for, and the proceedings of, the first ISA-TAB workshop held December 6-8, 2007, at the EBI, Cambridge, UK. This exploratory workshop, organized by members of the Microarray Gene Expression Data (MGED) Society's Reporting Structure for Biological Investigations (RSBI) working group, brought together a group of developers of a range of collaborative systems to discuss the use of a common format to address the pressing need of reporting and communicating data and metadata from biological, biomedical, and environmental studies employing combinations of genomics, transcriptomics, proteomics, and metabolomics technologies along with more conventional methodologies. The expertise of the participants comprised database development, data management, and hands-on experience in the development of data communication standards. The workshop's outcomes are set to help formalize the proposed Investigation, Study, Assay (ISA)-TAB tab-delimited format for representing and communicating experimental metadata. This article is part of the special issue of OMICS on the activities of the Genomics Standards Consortium (GSC).

引用

页码：143 / 149

页数：7

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