Viral metagenomics

被引:616
作者
Edwards, RA
Rohwer, F
机构
[1] San Diego State Univ, Dept Biol, San Diego, CA 92182 USA
[2] San Diego State Univ, Ctr Microbial Sci, San Diego, CA 92182 USA
[3] Fellowship Interpretat Genomes, Chicago, IL 60527 USA
关键词
D O I
10.1038/nrmicro1163
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Viruses, most of which infect microorganisms, are the most abundant biological entities on the planet. Identifying and measuring the community dynamics of viruses in the environment is complicated because less than one percent of microbial hosts have been cultivated. Also, there is no single gene that is common to all viral genomes, so total uncultured viral diversity cannot be monitored using approaches analogous to ribosomal DNA profiling. Metagenomic analyses of uncultured viral communities circumvent these limitations and can provide insights into the composition and structure of environmental viral communities.
引用
收藏
页码:504 / 510
页数:7
相关论文
共 44 条
[41]   Prokaryotes: The unseen majority [J].
Whitman, WB ;
Coleman, DC ;
Wiebe, WJ .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1998, 95 (12) :6578-6583
[42]   Virioplankton: Viruses in aquatic ecosystems [J].
Wommack, KE ;
Colwell, RR .
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS, 2000, 64 (01) :69-+
[43]  
Wommack KE, 1999, APPL ENVIRON MICROB, V65, P231
[44]   Phylogenetic diversity of marine cyanophage isolates and natural virus communities as revealed by sequences of viral capsid assembly protein gene g20 [J].
Zhong, Y ;
Chen, F ;
Wilhelm, SW ;
Poorvin, L ;
Hodson, RE .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2002, 68 (04) :1576-1584