共 91 条
Technologies for the global discovery and analysis of alternative splicing
被引:23
作者:

Calarco, John A.
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机构:
Univ Toronto, Terrence Donnelly Ctr, Dept Mol & Med Genet, Banting & Best Dept Med Res, Toronto, ON M5S 3E1, Canada Univ Toronto, Terrence Donnelly Ctr, Dept Mol & Med Genet, Banting & Best Dept Med Res, Toronto, ON M5S 3E1, Canada

Saltzman, Arneet L.
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机构:
Univ Toronto, Terrence Donnelly Ctr, Dept Mol & Med Genet, Banting & Best Dept Med Res, Toronto, ON M5S 3E1, Canada Univ Toronto, Terrence Donnelly Ctr, Dept Mol & Med Genet, Banting & Best Dept Med Res, Toronto, ON M5S 3E1, Canada

Ip, Joanna Y.
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机构:
Univ Toronto, Terrence Donnelly Ctr, Dept Mol & Med Genet, Banting & Best Dept Med Res, Toronto, ON M5S 3E1, Canada Univ Toronto, Terrence Donnelly Ctr, Dept Mol & Med Genet, Banting & Best Dept Med Res, Toronto, ON M5S 3E1, Canada

Blencowe, Benjaminj.
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机构:
Univ Toronto, Terrence Donnelly Ctr, Dept Mol & Med Genet, Banting & Best Dept Med Res, Toronto, ON M5S 3E1, Canada Univ Toronto, Terrence Donnelly Ctr, Dept Mol & Med Genet, Banting & Best Dept Med Res, Toronto, ON M5S 3E1, Canada
机构:
[1] Univ Toronto, Terrence Donnelly Ctr, Dept Mol & Med Genet, Banting & Best Dept Med Res, Toronto, ON M5S 3E1, Canada
来源:
ALTERNATIVE SPLICING IN THE POSTGENOMIC ERA
|
2007年
/
623卷
关键词:
D O I:
10.1007/978-0-387-77374-2_5
中图分类号:
R-3 [医学研究方法];
R3 [基础医学];
学科分类号:
1001 ;
摘要:
During the past similar to 20 years, studies on alternative splicing (AS) have largely been directed at the identification and characterization of factors and mechanisms responsible for the control of splice site selection, using model substrates and on a case by case basis. These studies have provided a wealth of information on the factors and interactions that control formation of the spliceosome. However, relatively little is known about the global regulatory properties of AS. Important questions that need to be addressed are: which exons are alternatively spliced and under which cellular contexts, what are the functional roles of AS events in different cellular contexts, and how are AS events controlled and coordinated with each other and with other levels of gene regulation to achieve cell- and development- specific functions. During the past several years, new technologies and experimental strategies have provided insight into these questions. For example, custom microarrays and data analysis tools are playing a prominent role in the discovery and analysis of splicing regulation. Moreover, several non-microarray-based technologies are emerging that will likely further fuel progress in this area. This review focuses on recent advances made in the development and application of high-throughput methods to study AS.
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页码:64 / 84
页数:21
相关论文
共 91 条
[41]
The evolving roles of alternative splicing
[J].
Lareau, LF
;
Green, RE
;
Bhatnagar, RS
;
Brenner, SE
.
CURRENT OPINION IN STRUCTURAL BIOLOGY,
2004, 14 (03)
:273-282

Lareau, LF
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Calif Berkeley, Dept Mol & Cell Biol, Berkeley, CA 94720 USA Univ Calif Berkeley, Dept Mol & Cell Biol, Berkeley, CA 94720 USA

Green, RE
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif Berkeley, Dept Mol & Cell Biol, Berkeley, CA 94720 USA

Bhatnagar, RS
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif Berkeley, Dept Mol & Cell Biol, Berkeley, CA 94720 USA

Brenner, SE
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif Berkeley, Dept Mol & Cell Biol, Berkeley, CA 94720 USA
[42]
Detecting tissue-specific regulation of alternative splicing as a qualitative change in microarray data
[J].
Le, K
;
Mitsouras, K
;
Roy, M
;
Wang, Q
;
Xu, Q
;
Nelson, SF
;
Lee, C
.
NUCLEIC ACIDS RESEARCH,
2004, 32 (22)
:e180

Le, K
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif Los Angeles, Ctr Genom & Proteom, Inst Mol Biol, Dept Chem & Biochem, Los Angeles, CA 90095 USA

Mitsouras, K
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif Los Angeles, Ctr Genom & Proteom, Inst Mol Biol, Dept Chem & Biochem, Los Angeles, CA 90095 USA

Roy, M
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif Los Angeles, Ctr Genom & Proteom, Inst Mol Biol, Dept Chem & Biochem, Los Angeles, CA 90095 USA

Wang, Q
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif Los Angeles, Ctr Genom & Proteom, Inst Mol Biol, Dept Chem & Biochem, Los Angeles, CA 90095 USA

Xu, Q
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif Los Angeles, Ctr Genom & Proteom, Inst Mol Biol, Dept Chem & Biochem, Los Angeles, CA 90095 USA

Nelson, SF
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif Los Angeles, Ctr Genom & Proteom, Inst Mol Biol, Dept Chem & Biochem, Los Angeles, CA 90095 USA

Lee, C
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Calif Los Angeles, Ctr Genom & Proteom, Inst Mol Biol, Dept Chem & Biochem, Los Angeles, CA 90095 USA Univ Calif Los Angeles, Ctr Genom & Proteom, Inst Mol Biol, Dept Chem & Biochem, Los Angeles, CA 90095 USA
[43]
Mechanistic links between nonsense-mediated mRNA decay and pre-mRNA splicing in mammalian cells
[J].
Lejeune, F
;
Maquat, LE
.
CURRENT OPINION IN CELL BIOLOGY,
2005, 17 (03)
:309-315

论文数: 引用数:
h-index:
机构:

Maquat, LE
论文数: 0 引用数: 0
h-index: 0
机构: Univ Rochester, Sch Med & Dent, Dept Biochem & Biophys, Rochester, NY 14627 USA
[44]
Evidence for the widespread coupling of alternative splicing and nonsense-mediated mRNA decay in humans
[J].
Lewis, BP
;
Green, RE
;
Brenner, SE
.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA,
2003, 100 (01)
:189-192

Lewis, BP
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif Berkeley, Dept Plant & Microbial Biol, Berkeley, CA 94720 USA

Green, RE
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif Berkeley, Dept Plant & Microbial Biol, Berkeley, CA 94720 USA

Brenner, SE
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif Berkeley, Dept Plant & Microbial Biol, Berkeley, CA 94720 USA
[45]
Cell type and culture condition-dependent alternative splicing in human breast cancer cells revealed by splicing-sensitive microarrays
[J].
Li, CX
;
Kato, M
;
Shiue, L
;
Shively, JE
;
Ares, M
;
Lin, RJ
.
CANCER RESEARCH,
2006, 66 (04)
:1990-1999

Li, CX
论文数: 0 引用数: 0
h-index: 0
机构: City Hope Natl Med Ctr, Beckman Res Inst, Div Mol Biol, City Hope Grad Sch Biol Sci, Duarte, CA 91010 USA

Kato, M
论文数: 0 引用数: 0
h-index: 0
机构: City Hope Natl Med Ctr, Beckman Res Inst, Div Mol Biol, City Hope Grad Sch Biol Sci, Duarte, CA 91010 USA

Shiue, L
论文数: 0 引用数: 0
h-index: 0
机构: City Hope Natl Med Ctr, Beckman Res Inst, Div Mol Biol, City Hope Grad Sch Biol Sci, Duarte, CA 91010 USA

Shively, JE
论文数: 0 引用数: 0
h-index: 0
机构: City Hope Natl Med Ctr, Beckman Res Inst, Div Mol Biol, City Hope Grad Sch Biol Sci, Duarte, CA 91010 USA

Ares, M
论文数: 0 引用数: 0
h-index: 0
机构: City Hope Natl Med Ctr, Beckman Res Inst, Div Mol Biol, City Hope Grad Sch Biol Sci, Duarte, CA 91010 USA

Lin, RJ
论文数: 0 引用数: 0
h-index: 0
机构: City Hope Natl Med Ctr, Beckman Res Inst, Div Mol Biol, City Hope Grad Sch Biol Sci, Duarte, CA 91010 USA
[46]
Two-dimensional transcriptome profiling: Identification of messenger RNA isoform signatures in prostate cancer from archived paraffin-embedded cancer specimens
[J].
Li, HR
;
Wang-Rodriguez, J
;
Nair, TM
;
Yeakley, JM
;
Kwon, YS
;
Bibikova, M
;
Zheng, C
;
Zhou, LX
;
Zhang, K
;
Downs, T
;
Fu, XD
;
Fan, JB
.
CANCER RESEARCH,
2006, 66 (08)
:4079-4088

Li, HR
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif San Diego, Dept Cellular & Mol Med, La Jolla, CA 92093 USA

Wang-Rodriguez, J
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif San Diego, Dept Cellular & Mol Med, La Jolla, CA 92093 USA

Nair, TM
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif San Diego, Dept Cellular & Mol Med, La Jolla, CA 92093 USA

Yeakley, JM
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif San Diego, Dept Cellular & Mol Med, La Jolla, CA 92093 USA

Kwon, YS
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif San Diego, Dept Cellular & Mol Med, La Jolla, CA 92093 USA

Bibikova, M
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif San Diego, Dept Cellular & Mol Med, La Jolla, CA 92093 USA

Zheng, C
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif San Diego, Dept Cellular & Mol Med, La Jolla, CA 92093 USA

Zhou, LX
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif San Diego, Dept Cellular & Mol Med, La Jolla, CA 92093 USA

Zhang, K
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif San Diego, Dept Cellular & Mol Med, La Jolla, CA 92093 USA

Downs, T
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif San Diego, Dept Cellular & Mol Med, La Jolla, CA 92093 USA

Fu, XD
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Calif San Diego, Dept Cellular & Mol Med, La Jolla, CA 92093 USA Univ Calif San Diego, Dept Cellular & Mol Med, La Jolla, CA 92093 USA

Fan, JB
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif San Diego, Dept Cellular & Mol Med, La Jolla, CA 92093 USA
[47]
Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs
[J].
Lim, LP
;
Lau, NC
;
Garrett-Engele, P
;
Grimson, A
;
Schelter, JM
;
Castle, J
;
Bartel, DP
;
Linsley, PS
;
Johnson, JM
.
NATURE,
2005, 433 (7027)
:769-773

Lim, LP
论文数: 0 引用数: 0
h-index: 0
机构: Rosetta Inpharmat, Seattle, WA 98109 USA

Lau, NC
论文数: 0 引用数: 0
h-index: 0
机构: Rosetta Inpharmat, Seattle, WA 98109 USA

Garrett-Engele, P
论文数: 0 引用数: 0
h-index: 0
机构: Rosetta Inpharmat, Seattle, WA 98109 USA

Grimson, A
论文数: 0 引用数: 0
h-index: 0
机构: Rosetta Inpharmat, Seattle, WA 98109 USA

Schelter, JM
论文数: 0 引用数: 0
h-index: 0
机构: Rosetta Inpharmat, Seattle, WA 98109 USA

Castle, J
论文数: 0 引用数: 0
h-index: 0
机构: Rosetta Inpharmat, Seattle, WA 98109 USA

Bartel, DP
论文数: 0 引用数: 0
h-index: 0
机构: Rosetta Inpharmat, Seattle, WA 98109 USA

Linsley, PS
论文数: 0 引用数: 0
h-index: 0
机构: Rosetta Inpharmat, Seattle, WA 98109 USA

Johnson, JM
论文数: 0 引用数: 0
h-index: 0
机构: Rosetta Inpharmat, Seattle, WA 98109 USA
[48]
The developmental consequences of alternate splicing in sex determination and differentiation in Drosophila
[J].
MacDougall, C
;
Harbison, D
;
Bownes, M
.
DEVELOPMENTAL BIOLOGY,
1995, 172 (02)
:353-376

MacDougall, C
论文数: 0 引用数: 0
h-index: 0
机构:
UNIV EDINBURGH, DEPT MOLEC BIOL, EDINBURGH EH9 3JR, MIDLOTHIAN, SCOTLAND UNIV EDINBURGH, DEPT MOLEC BIOL, EDINBURGH EH9 3JR, MIDLOTHIAN, SCOTLAND

Harbison, D
论文数: 0 引用数: 0
h-index: 0
机构:
UNIV EDINBURGH, DEPT MOLEC BIOL, EDINBURGH EH9 3JR, MIDLOTHIAN, SCOTLAND UNIV EDINBURGH, DEPT MOLEC BIOL, EDINBURGH EH9 3JR, MIDLOTHIAN, SCOTLAND

Bownes, M
论文数: 0 引用数: 0
h-index: 0
机构:
UNIV EDINBURGH, DEPT MOLEC BIOL, EDINBURGH EH9 3JR, MIDLOTHIAN, SCOTLAND UNIV EDINBURGH, DEPT MOLEC BIOL, EDINBURGH EH9 3JR, MIDLOTHIAN, SCOTLAND
[49]
Genome sequencing in microfabricated high-density picolitre reactors
[J].
Margulies, M
;
Egholm, M
;
Altman, WE
;
Attiya, S
;
Bader, JS
;
Bemben, LA
;
Berka, J
;
Braverman, MS
;
Chen, YJ
;
Chen, ZT
;
Dewell, SB
;
Du, L
;
Fierro, JM
;
Gomes, XV
;
Godwin, BC
;
He, W
;
Helgesen, S
;
Ho, CH
;
Irzyk, GP
;
Jando, SC
;
Alenquer, MLI
;
Jarvie, TP
;
Jirage, KB
;
Kim, JB
;
Knight, JR
;
Lanza, JR
;
Leamon, JH
;
Lefkowitz, SM
;
Lei, M
;
Li, J
;
Lohman, KL
;
Lu, H
;
Makhijani, VB
;
McDade, KE
;
McKenna, MP
;
Myers, EW
;
Nickerson, E
;
Nobile, JR
;
Plant, R
;
Puc, BP
;
Ronan, MT
;
Roth, GT
;
Sarkis, GJ
;
Simons, JF
;
Simpson, JW
;
Srinivasan, M
;
Tartaro, KR
;
Tomasz, A
;
Vogt, KA
;
Volkmer, GA
.
NATURE,
2005, 437 (7057)
:376-380

Margulies, M
论文数: 0 引用数: 0
h-index: 0
机构: Life Sci Corp 454, Branford, CT 06405 USA

Egholm, M
论文数: 0 引用数: 0
h-index: 0
机构: Life Sci Corp 454, Branford, CT 06405 USA

Altman, WE
论文数: 0 引用数: 0
h-index: 0
机构: Life Sci Corp 454, Branford, CT 06405 USA

Attiya, S
论文数: 0 引用数: 0
h-index: 0
机构: Life Sci Corp 454, Branford, CT 06405 USA

Bader, JS
论文数: 0 引用数: 0
h-index: 0
机构: Life Sci Corp 454, Branford, CT 06405 USA

Bemben, LA
论文数: 0 引用数: 0
h-index: 0
机构: Life Sci Corp 454, Branford, CT 06405 USA

Berka, J
论文数: 0 引用数: 0
h-index: 0
机构: Life Sci Corp 454, Branford, CT 06405 USA

Braverman, MS
论文数: 0 引用数: 0
h-index: 0
机构: Life Sci Corp 454, Branford, CT 06405 USA

Chen, YJ
论文数: 0 引用数: 0
h-index: 0
机构: Life Sci Corp 454, Branford, CT 06405 USA

Chen, ZT
论文数: 0 引用数: 0
h-index: 0
机构: Life Sci Corp 454, Branford, CT 06405 USA

Dewell, SB
论文数: 0 引用数: 0
h-index: 0
机构: Life Sci Corp 454, Branford, CT 06405 USA

Du, L
论文数: 0 引用数: 0
h-index: 0
机构: Life Sci Corp 454, Branford, CT 06405 USA

Fierro, JM
论文数: 0 引用数: 0
h-index: 0
机构: Life Sci Corp 454, Branford, CT 06405 USA

Gomes, XV
论文数: 0 引用数: 0
h-index: 0
机构: Life Sci Corp 454, Branford, CT 06405 USA

Godwin, BC
论文数: 0 引用数: 0
h-index: 0
机构: Life Sci Corp 454, Branford, CT 06405 USA

He, W
论文数: 0 引用数: 0
h-index: 0
机构: Life Sci Corp 454, Branford, CT 06405 USA

Helgesen, S
论文数: 0 引用数: 0
h-index: 0
机构: Life Sci Corp 454, Branford, CT 06405 USA

Ho, CH
论文数: 0 引用数: 0
h-index: 0
机构: Life Sci Corp 454, Branford, CT 06405 USA

Irzyk, GP
论文数: 0 引用数: 0
h-index: 0
机构: Life Sci Corp 454, Branford, CT 06405 USA

Jando, SC
论文数: 0 引用数: 0
h-index: 0
机构: Life Sci Corp 454, Branford, CT 06405 USA

Alenquer, MLI
论文数: 0 引用数: 0
h-index: 0
机构: Life Sci Corp 454, Branford, CT 06405 USA

Jarvie, TP
论文数: 0 引用数: 0
h-index: 0
机构: Life Sci Corp 454, Branford, CT 06405 USA

Jirage, KB
论文数: 0 引用数: 0
h-index: 0
机构: Life Sci Corp 454, Branford, CT 06405 USA

Kim, JB
论文数: 0 引用数: 0
h-index: 0
机构: Life Sci Corp 454, Branford, CT 06405 USA

Knight, JR
论文数: 0 引用数: 0
h-index: 0
机构: Life Sci Corp 454, Branford, CT 06405 USA

Lanza, JR
论文数: 0 引用数: 0
h-index: 0
机构: Life Sci Corp 454, Branford, CT 06405 USA

Leamon, JH
论文数: 0 引用数: 0
h-index: 0
机构: Life Sci Corp 454, Branford, CT 06405 USA

Lefkowitz, SM
论文数: 0 引用数: 0
h-index: 0
机构: Life Sci Corp 454, Branford, CT 06405 USA

Lei, M
论文数: 0 引用数: 0
h-index: 0
机构: Life Sci Corp 454, Branford, CT 06405 USA

Li, J
论文数: 0 引用数: 0
h-index: 0
机构: Life Sci Corp 454, Branford, CT 06405 USA

Lohman, KL
论文数: 0 引用数: 0
h-index: 0
机构: Life Sci Corp 454, Branford, CT 06405 USA

Lu, H
论文数: 0 引用数: 0
h-index: 0
机构: Life Sci Corp 454, Branford, CT 06405 USA

Makhijani, VB
论文数: 0 引用数: 0
h-index: 0
机构: Life Sci Corp 454, Branford, CT 06405 USA

McDade, KE
论文数: 0 引用数: 0
h-index: 0
机构: Life Sci Corp 454, Branford, CT 06405 USA

McKenna, MP
论文数: 0 引用数: 0
h-index: 0
机构: Life Sci Corp 454, Branford, CT 06405 USA

Myers, EW
论文数: 0 引用数: 0
h-index: 0
机构: Life Sci Corp 454, Branford, CT 06405 USA

Nickerson, E
论文数: 0 引用数: 0
h-index: 0
机构: Life Sci Corp 454, Branford, CT 06405 USA

Nobile, JR
论文数: 0 引用数: 0
h-index: 0
机构: Life Sci Corp 454, Branford, CT 06405 USA

Plant, R
论文数: 0 引用数: 0
h-index: 0
机构: Life Sci Corp 454, Branford, CT 06405 USA

Puc, BP
论文数: 0 引用数: 0
h-index: 0
机构: Life Sci Corp 454, Branford, CT 06405 USA

Ronan, MT
论文数: 0 引用数: 0
h-index: 0
机构: Life Sci Corp 454, Branford, CT 06405 USA

Roth, GT
论文数: 0 引用数: 0
h-index: 0
机构: Life Sci Corp 454, Branford, CT 06405 USA

Sarkis, GJ
论文数: 0 引用数: 0
h-index: 0
机构: Life Sci Corp 454, Branford, CT 06405 USA

Simons, JF
论文数: 0 引用数: 0
h-index: 0
机构: Life Sci Corp 454, Branford, CT 06405 USA

Simpson, JW
论文数: 0 引用数: 0
h-index: 0
机构: Life Sci Corp 454, Branford, CT 06405 USA

Srinivasan, M
论文数: 0 引用数: 0
h-index: 0
机构: Life Sci Corp 454, Branford, CT 06405 USA

Tartaro, KR
论文数: 0 引用数: 0
h-index: 0
机构: Life Sci Corp 454, Branford, CT 06405 USA

Tomasz, A
论文数: 0 引用数: 0
h-index: 0
机构: Life Sci Corp 454, Branford, CT 06405 USA

Vogt, KA
论文数: 0 引用数: 0
h-index: 0
机构: Life Sci Corp 454, Branford, CT 06405 USA

Volkmer, GA
论文数: 0 引用数: 0
h-index: 0
机构: Life Sci Corp 454, Branford, CT 06405 USA
[50]
High-throughput alternative splicing quantification by primer extension and matrix-assisted laser desorption/ionization time-of-flight mass spectrometry
[J].
McCullough, RM
;
Cantor, CR
;
Ding, CM
.
NUCLEIC ACIDS RESEARCH,
2005, 33 (11)
:1-9

McCullough, RM
论文数: 0 引用数: 0
h-index: 0
机构: Chinese Univ Hong Kong, Prince Wales Hosp, Ctr Emerging Infect Dis, Sch Publ Hlth,Fac Med, Shatin, Hong Kong, Peoples R China

Cantor, CR
论文数: 0 引用数: 0
h-index: 0
机构: Chinese Univ Hong Kong, Prince Wales Hosp, Ctr Emerging Infect Dis, Sch Publ Hlth,Fac Med, Shatin, Hong Kong, Peoples R China

Ding, CM
论文数: 0 引用数: 0
h-index: 0
机构: Chinese Univ Hong Kong, Prince Wales Hosp, Ctr Emerging Infect Dis, Sch Publ Hlth,Fac Med, Shatin, Hong Kong, Peoples R China