Polyketide synthases and nonribosomal peptide synthetases: the emerging view from bacterial genomics

被引:214
作者
Donadio, Stefano [1 ]
Monciardini, Paolo [1 ]
Sosio, Margherita [1 ]
机构
[1] KtedoGen, I-20132 Milan, Italy
关键词
D O I
10.1039/b514050c
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
A total of 223 complete bacterial genomes are analyzed, with 281 citations, for the presence of genes encoding modular polyketide synthases (PKS) and nonribosomal peptide synthetases (NRPS). We report on the distribution of these systems in different bacterial taxa and, whenever known, the metabolites they synthesize. We also highlight, in the different bacterial lineages, the PKS and NRPS genes and, whenever known, the corresponding products.
引用
收藏
页码:1073 / 1109
页数:37
相关论文
共 288 条
[1]   Yersinia pestis, the cause of plague, is a recently emerged clone of Yersinia pseudotuberculosis [J].
Achtman, M ;
Zurth, K ;
Morelli, C ;
Torrea, G ;
Guiyoule, A ;
Carniel, E .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1999, 96 (24) :14043-14048
[2]   Genome sequence of Streptococcus mutans UA159, a cariogenic dental pathogen [J].
Ajdic, D ;
McShan, WM ;
McLaughlin, RE ;
Savic, G ;
Chang, J ;
Carson, MB ;
Primeaux, C ;
Tian, RY ;
Kenton, S ;
Jia, HG ;
Lin, SP ;
Qian, YD ;
Li, SL ;
Zhu, H ;
Najar, F ;
Lai, HS ;
White, J ;
Roe, BA ;
Ferretti, JJ .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2002, 99 (22) :14434-14439
[3]   Genome sequence of the endocellular obligate symbiont of tsetse flies, Wigglesworthia glossinidia [J].
Akman, L ;
Yamashita, A ;
Watanabe, H ;
Oshima, K ;
Shiba, T ;
Hattori, M ;
Aksoy, S .
NATURE GENETICS, 2002, 32 (03) :402-407
[4]   Bacterial genome sequencing and drug discovery [J].
Allsop, AE .
CURRENT OPINION IN BIOTECHNOLOGY, 1998, 9 (06) :637-642
[5]   Genomic-sequence comparison of two unrelated isolates of the human gastric pathogen Helicobacter pylori [J].
Alm, RA ;
Ling, LSL ;
Moir, DT ;
King, BL ;
Brown, ED ;
Doig, PC ;
Smith, DR ;
Noonan, B ;
Guild, BC ;
deJonge, BL ;
Carmel, G ;
Tummino, PJ ;
Caruso, A ;
Uria-Nickelsen, M ;
Mills, DM ;
Ives, C ;
Gibson, R ;
Merberg, D ;
Mills, SD ;
Jiang, Q ;
Taylor, DE ;
Vovis, GF ;
Trost, TJ .
NATURE, 1999, 397 (6715) :176-180
[6]   The louse-borne human pathogen Bartonella quintana is a genomic derivative of the zoonotic agent Bartonella henselae [J].
Alsmark, CM ;
Frank, AC ;
Karlberg, EO ;
Legault, BA ;
Ardell, DH ;
Canbäck, B ;
Eriksson, AS ;
Näslund, AK ;
Handley, SA ;
Huvet, M ;
La Scola, B ;
Holmberg, M ;
Andersson, SGE .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2004, 101 (26) :9716-9721
[7]   Complete genome sequence of the probiotic lactic acid bacterium Lactobacillus acidophilus NCFM [J].
Altermann, E ;
Russell, WM ;
Azcarate-Peril, MA ;
Barrangou, R ;
Buck, BL ;
McAuliffe, O ;
Souther, N ;
Dobson, A ;
Duong, T ;
Callanan, M ;
Lick, S ;
Hamrick, A ;
Cano, R ;
Klaenhammer, TR .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2005, 102 (11) :3906-3912
[8]   The genome sequence of Rickettsia prowazekii and the origin of mitochondria [J].
Andersson, SGE ;
Zomorodipour, A ;
Andersson, JO ;
Sicheritz-Pontén, T ;
Alsmark, UCM ;
Podowski, RM ;
Näslund, AK ;
Eriksson, AS ;
Winkler, HH ;
Kurland, CG .
NATURE, 1998, 396 (6707) :133-140
[9]   Complete genome sequence and analysis of Wolinella succinogenes [J].
Baar, C ;
Eppinger, M ;
Raddatz, G ;
Simon, J ;
Lanz, C ;
Klimmek, O ;
Nandakumar, R ;
Gross, R ;
Rosinus, A ;
Keller, H ;
Jagtap, P ;
Linke, B ;
Meyer, F ;
Lederer, H ;
Schuster, SC .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2003, 100 (20) :11690-11695
[10]   Genome and virulence determinants of high virulence community-acquired MRSA [J].
Baba, T ;
Takeuchi, F ;
Kuroda, M ;
Yuzawa, H ;
Aoki, K ;
Oguchi, A ;
Nagai, Y ;
Iwama, N ;
Asano, K ;
Naimi, T ;
Kuroda, H ;
Cui, L ;
Yamamoto, K ;
Hiramatsu, K .
LANCET, 2002, 359 (9320) :1819-1827