Polyketide synthases and nonribosomal peptide synthetases: the emerging view from bacterial genomics

被引:217
作者
Donadio, Stefano [1 ]
Monciardini, Paolo [1 ]
Sosio, Margherita [1 ]
机构
[1] KtedoGen, I-20132 Milan, Italy
关键词
D O I
10.1039/b514050c
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
A total of 223 complete bacterial genomes are analyzed, with 281 citations, for the presence of genes encoding modular polyketide synthases (PKS) and nonribosomal peptide synthetases (NRPS). We report on the distribution of these systems in different bacterial taxa and, whenever known, the metabolites they synthesize. We also highlight, in the different bacterial lineages, the PKS and NRPS genes and, whenever known, the corresponding products.
引用
收藏
页码:1073 / 1109
页数:37
相关论文
共 288 条
[81]   Major structural differences and novel potential virulence mechanisms from the genomes of multiple Campylobacter species [J].
Fouts, DE ;
Mongodin, EF ;
Mandrell, RE ;
Miller, WG ;
Rasko, DA ;
Ravel, J ;
Brinkac, LM ;
DeBoy, RT ;
Parker, CT ;
Daugherty, SC ;
Dodson, RJ ;
Durkin, AS ;
Madupu, R ;
Sullivan, SA ;
Shetty, JU ;
Ayodeji, MA ;
Shvartsbeyn, A ;
Schatz, MC ;
Badger, JH ;
Fraser, CM ;
Nelson, KE .
PLOS BIOLOGY, 2005, 3 (01) :72-85
[82]   THE MINIMAL GENE COMPLEMENT OF MYCOPLASMA-GENITALIUM [J].
FRASER, CM ;
GOCAYNE, JD ;
WHITE, O ;
ADAMS, MD ;
CLAYTON, RA ;
FLEISCHMANN, RD ;
BULT, CJ ;
KERLAVAGE, AR ;
SUTTON, G ;
KELLEY, JM ;
FRITCHMAN, JL ;
WEIDMAN, JF ;
SMALL, KV ;
SANDUSKY, M ;
FUHRMANN, J ;
NGUYEN, D ;
UTTERBACK, TR ;
SAUDEK, DM ;
PHILLIPS, CA ;
MERRICK, JM ;
TOMB, JF ;
DOUGHERTY, BA ;
BOTT, KF ;
HU, PC ;
LUCIER, TS ;
PETERSON, SN ;
SMITH, HO ;
HUTCHISON, CA ;
VENTER, JC .
SCIENCE, 1995, 270 (5235) :397-403
[83]   Genomic sequence of a Lyme disease spirochaete, Borrelia burgdorferi [J].
Fraser, CM ;
Casjens, S ;
Huang, WM ;
Sutton, GG ;
Clayton, R ;
Lathigra, R ;
White, O ;
Ketchum, KA ;
Dodson, R ;
Hickey, EK ;
Gwinn, M ;
Dougherty, B ;
Tomb, JF ;
Fleischmann, RD ;
Richardson, D ;
Peterson, J ;
Kerlavage, AR ;
Quackenbush, J ;
Salzberg, S ;
Hanson, M ;
vanVugt, R ;
Palmer, N ;
Adams, MD ;
Gocayne, J ;
Weidman, J ;
Utterback, T ;
Watthey, L ;
McDonald, L ;
Artiach, P ;
Bowman, C ;
Garland, S ;
Fujii, C ;
Cotton, MD ;
Horst, K ;
Roberts, K ;
Hatch, B ;
Smith, HO ;
Venter, JC .
NATURE, 1997, 390 (6660) :580-586
[84]   Complete genome sequence of Treponema pallidum, the syphilis spirochete [J].
Fraser, CM ;
Norris, SJ ;
Weinstock, CM ;
White, O ;
Sutton, GG ;
Dodson, R ;
Gwinn, M ;
Hickey, EK ;
Clayton, R ;
Ketchum, KA ;
Sodergren, E ;
Hardham, JM ;
McLeod, MP ;
Salzberg, S ;
Peterson, J ;
Khalak, H ;
Richardson, D ;
Howell, JK ;
Chidambaram, M ;
Utterback, T ;
McDonald, L ;
Artiach, P ;
Bowman, C ;
Cotton, MD ;
Fujii, C ;
Garland, S ;
Hatch, B ;
Horst, K ;
Roberts, K ;
Sandusky, M ;
Weidman, J ;
Smith, HO ;
Venter, JC .
SCIENCE, 1998, 281 (5375) :375-388
[85]   Comparative genomic analysis of three strains of Ehrlichia ruminantium reveals an active process of genome size plasticity [J].
Frutos, R ;
Viari, A ;
Ferraz, C ;
Morgat, A ;
Eychenié, S ;
Kandassamy, Y ;
Chantal, I ;
Bensaid, A ;
Coissac, E ;
Vachiery, N ;
Demaille, J ;
Martinez, D .
JOURNAL OF BACTERIOLOGY, 2006, 188 (07) :2533-2542
[86]   The composite genome of the legume symbiont Sinorhizobium meliloti [J].
Galibert, F ;
Finan, TM ;
Long, SR ;
Pühler, A ;
Abola, P ;
Ampe, F ;
Barloy-Hubler, F ;
Barnett, MJ ;
Becker, A ;
Boistard, P ;
Bothe, G ;
Boutry, M ;
Bowser, L ;
Buhrmester, J ;
Cadieu, E ;
Capela, D ;
Chain, P ;
Cowie, A ;
Davis, RW ;
Dréano, S ;
Federspiel, NA ;
Fisher, RF ;
Gloux, S ;
Godrie, T ;
Goffeau, A ;
Golding, B ;
Gouzy, J ;
Gurjal, M ;
Hernandez-Lucas, I ;
Hong, A ;
Huizar, L ;
Hyman, RW ;
Jones, T ;
Kahn, D ;
Kahn, ML ;
Kalman, S ;
Keating, DH ;
Kiss, E ;
Komp, C ;
Lalaure, V ;
Masuy, D ;
Palm, C ;
Peck, MC ;
Pohl, TM ;
Portetelle, D ;
Purnelle, B ;
Ramsperger, U ;
Surzycki, R ;
Thébault, P ;
Vandenbol, M .
SCIENCE, 2001, 293 (5530) :668-672
[87]   Elevation of three subspecies of Pectobacterium carotovorum to species level:: Pectobacterium atrosepticum sp nov., Pectobacterium betavasculorum sp nov and Pectobacterium wasabiae sp nov. [J].
Gardan, L ;
Gouy, C ;
Christen, R ;
Samson, R .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2003, 53 :381-391
[88]   The genome sequence of Blochmannia floridanus:: Comparative analysis of reduced genomes [J].
Gil, R ;
Silva, FJ ;
Zientz, E ;
Delmotte, F ;
González-Candelas, F ;
Latorre, A ;
Rausell, C ;
Kamerbeek, J ;
Gadau, J ;
Hölldobler, B ;
van Ham, RCHJ ;
Gross, R ;
Moya, A .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2003, 100 (16) :9388-9393
[89]   Insights on evolution of virulence and resistance from the complete genome analysis of an early methicillin-resistant Staphylococcus aureus strain and a biofilm-producing methicillin-resistant Staphylococcus epidermidis strain [J].
Gill, SR ;
Fouts, DE ;
Archer, GL ;
Mongodin, EF ;
DeBoy, RT ;
Ravel, J ;
Paulsen, IT ;
Kolonay, JF ;
Brinkac, L ;
Beanan, M ;
Dodson, RJ ;
Daugherty, SC ;
Madupu, R ;
Angiuoli, SV ;
Durkin, AS ;
Haft, DH ;
Vamathevan, J ;
Khouri, H ;
Utterback, T ;
Lee, C ;
Dimitrov, G ;
Jiang, LX ;
Qin, HY ;
Weidman, J ;
Tran, K ;
Kang, K ;
Hance, IR ;
Nelson, KE ;
Fraser, CM .
JOURNAL OF BACTERIOLOGY, 2005, 187 (07) :2426-2438
[90]   Genome streamlining in a cosmopolitan oceanic bacterium [J].
Giovannoni, SJ ;
Tripp, HJ ;
Givan, S ;
Podar, M ;
Vergin, KL ;
Baptista, D ;
Bibbs, L ;
Eads, J ;
Richardson, TH ;
Noordewier, M ;
Rappé, MS ;
Short, JM ;
Carrington, JC ;
Mathur, EJ .
SCIENCE, 2005, 309 (5738) :1242-1245