共 28 条
Critical assessment of methods of protein structure prediction - Round VII
被引:154
作者:

Moult, John
论文数: 0 引用数: 0
h-index: 0
机构: Univ Maryland, Maryland Biotechnol Inst, Ctr Adv Res Biotechnol, Rockville, MD 20850 USA

Fidelis, Krzysztof
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h-index: 0
机构: Univ Maryland, Maryland Biotechnol Inst, Ctr Adv Res Biotechnol, Rockville, MD 20850 USA

Kryshtafovych, Andriy
论文数: 0 引用数: 0
h-index: 0
机构: Univ Maryland, Maryland Biotechnol Inst, Ctr Adv Res Biotechnol, Rockville, MD 20850 USA

Rost, Burkhard
论文数: 0 引用数: 0
h-index: 0
机构: Univ Maryland, Maryland Biotechnol Inst, Ctr Adv Res Biotechnol, Rockville, MD 20850 USA

Hubbard, Tim
论文数: 0 引用数: 0
h-index: 0
机构: Univ Maryland, Maryland Biotechnol Inst, Ctr Adv Res Biotechnol, Rockville, MD 20850 USA

Tramontano, Anna
论文数: 0 引用数: 0
h-index: 0
机构: Univ Maryland, Maryland Biotechnol Inst, Ctr Adv Res Biotechnol, Rockville, MD 20850 USA
机构:
[1] Univ Maryland, Maryland Biotechnol Inst, Ctr Adv Res Biotechnol, Rockville, MD 20850 USA
[2] Univ Calif Davis, Genome Ctr, Davis, CA 95616 USA
[3] Columbia Univ, Dept Biochem & Mol Biophys, CUBIC, NESG, New York, NY 10032 USA
[4] Univ Roma La Sapienza, Fdn Cenci Bolognetti, Inst Pasteur, I-00185 Rome, Italy
基金:
英国惠康基金;
关键词:
protein structure prediction;
community wide experiment;
CASP;
D O I:
10.1002/prot.21767
中图分类号:
Q5 [生物化学];
Q7 [分子生物学];
学科分类号:
071010 ;
081704 ;
摘要:
This paper is an introduction to the supplemental issue of the journal PROTEINS, dedicated to the seventh CASP experiment to assess the state of the art in protein structure prediction. The paper describes the conduct of the experiment, the categories of prediction included, and outlines the evaluation and assessment procedures. Highlights are improvements in model accuracy relative to that obtainable from knowledge of a single best template structure; convergence of the accuracy of models produced by automatic serve, toward that produced by human modeling teams; the emergence of methods for predicting the quality of models; and rapidly increasing practical application of the methods.
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收藏
页码:3 / 9
页数:7
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[1]
Automated server predictions in CASP7
[J].
Battey, James N. D.
;
Kopp, Jurgen
;
Bordoli, Lorenza
;
Read, Randy J.
;
Clarke, Neil D.
;
Schwede, Torsten
.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS,
2007, 69
:68-82

Battey, James N. D.
论文数: 0 引用数: 0
h-index: 0
机构: Univ Basel, Biozentrum, Basel, Switzerland

Kopp, Jurgen
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Bordoli, Lorenza
论文数: 0 引用数: 0
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Read, Randy J.
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Clarke, Neil D.
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h-index:
机构:
[2]
Assessment of disorder predictions in CASP7
[J].
Bordoli, Lorenza
;
Kiefer, Florian
;
Schwede, Torsten
.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS,
2007, 69
:129-136

Bordoli, Lorenza
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Basel, Biozentrum, Swiss Inst Bioinformat, CH-4056 Basel, Switzerland Univ Basel, Biozentrum, Swiss Inst Bioinformat, CH-4056 Basel, Switzerland

Kiefer, Florian
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Basel, Biozentrum, Swiss Inst Bioinformat, CH-4056 Basel, Switzerland Univ Basel, Biozentrum, Swiss Inst Bioinformat, CH-4056 Basel, Switzerland

Schwede, Torsten
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Basel, Biozentrum, Swiss Inst Bioinformat, CH-4056 Basel, Switzerland Univ Basel, Biozentrum, Swiss Inst Bioinformat, CH-4056 Basel, Switzerland
[3]
Domain definition and target classification for CASP7
[J].
Clarke, Neil D.
;
Ezkurdia, Iakes
;
Kopp, Jurgen
;
Read, Randy J.
;
Schwede, Torsten
;
Tress, Michael
.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS,
2007, 69
:10-18

Clarke, Neil D.
论文数: 0 引用数: 0
h-index: 0
机构: Spanish Natl Canc Res Ctr, Struct & Computat Biol Programme, Madrid, Spain

Ezkurdia, Iakes
论文数: 0 引用数: 0
h-index: 0
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Kopp, Jurgen
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h-index: 0
机构: Spanish Natl Canc Res Ctr, Struct & Computat Biol Programme, Madrid, Spain

Read, Randy J.
论文数: 0 引用数: 0
h-index: 0
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Schwede, Torsten
论文数: 0 引用数: 0
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Tress, Michael
论文数: 0 引用数: 0
h-index: 0
机构:
Spanish Natl Canc Res Ctr, Struct & Computat Biol Programme, Madrid, Spain Spanish Natl Canc Res Ctr, Struct & Computat Biol Programme, Madrid, Spain
[4]
Assessment of predictions in the model quality assessment category
[J].
Cozzetto, Domenico
;
Kryshtafovych, Andriy
;
Ceriani, Michele
;
Tramontano, Anna
.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS,
2007, 69
:175-183

Cozzetto, Domenico
论文数: 0 引用数: 0
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机构: Univ Roma La Sapienza, Dept Biochem Sci Rossi Fanelli, I-00185 Rome, Italy

Kryshtafovych, Andriy
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Ceriani, Michele
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Tramontano, Anna
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h-index: 0
机构: Univ Roma La Sapienza, Dept Biochem Sci Rossi Fanelli, I-00185 Rome, Italy
[5]
Intrinsically unstructured proteins and their functions
[J].
Dyson, HJ
;
Wright, PE
.
NATURE REVIEWS MOLECULAR CELL BIOLOGY,
2005, 6 (03)
:197-208

Dyson, HJ
论文数: 0 引用数: 0
h-index: 0
机构: Scripps Res Inst, Dept Mol Biol, La Jolla, CA 92037 USA

Wright, PE
论文数: 0 引用数: 0
h-index: 0
机构: Scripps Res Inst, Dept Mol Biol, La Jolla, CA 92037 USA
[6]
Evaluating the usefulness of protein structure models for molecular replacement
[J].
Giorgetti, A
;
Raimondo, D
;
Miele, AE
;
Tramontano, A
.
BIOINFORMATICS,
2005, 21
:72-76

Giorgetti, A
论文数: 0 引用数: 0
h-index: 0
机构: Univ Roma La Sapienza, Dept Biochem Sci, I-00185 Rome, Italy

Raimondo, D
论文数: 0 引用数: 0
h-index: 0
机构: Univ Roma La Sapienza, Dept Biochem Sci, I-00185 Rome, Italy

Miele, AE
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h-index: 0
机构: Univ Roma La Sapienza, Dept Biochem Sci, I-00185 Rome, Italy

Tramontano, A
论文数: 0 引用数: 0
h-index: 0
机构: Univ Roma La Sapienza, Dept Biochem Sci, I-00185 Rome, Italy
[7]
Assessment of intramolecular contact predictions for CASP7
[J].
Izarzugaza, Jose M. G.
;
Grana, Osvaldo
;
Tress, Michael L.
;
Valencia, Alfonso
;
Clarke, Neil D.
.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS,
2007, 69
:152-158

Izarzugaza, Jose M. G.
论文数: 0 引用数: 0
h-index: 0
机构: Spanish Natl Canc Res Ctr, Struct Biol & Biocomp Programme, E-28029 Madrid, Spain

Grana, Osvaldo
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Tress, Michael L.
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h-index: 0
机构: Spanish Natl Canc Res Ctr, Struct Biol & Biocomp Programme, E-28029 Madrid, Spain
[8]
Assessment of CASP7 structure predictions for template free targets
[J].
Jauch, Ralf
;
Yeo, Hock Chuan
;
Kolatkar, Prasanna R.
;
Clarke, Neil D.
.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS,
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:57-67

Jauch, Ralf
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机构:
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[9]
Assessment of CASP7 predictions for template-based modeling targets
[J].
Kopp, Jurgen
;
Bordoli, Lorenza
;
Battey, James N. D.
;
Kiefer, Florian
;
Schwede, Torsten
.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS,
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:38-56

Kopp, Jurgen
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论文数: 引用数:
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[10]
Progress over the first decade of CASP experiments
[J].
Kryshtafovych, A
;
Venclovas, C
;
Fidelis, K
;
Moult, J
.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS,
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:225-236

Kryshtafovych, A
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