In vitro selection of DNA aptamers binding ethanolamine

被引:119
作者
Mann, D [1 ]
Reinemann, C [1 ]
Stoltenburg, R [1 ]
Strehlitz, B [1 ]
机构
[1] UFZ Helmholtz Ctr Environm Res, Ctr Environm Res Leipzig Halle, D-04318 Leipzig, Germany
关键词
aptamer; ethanolamine; FluMag-SELEX; ethanolaminosis; small target; magnetic beads; biosensor;
D O I
10.1016/j.bbrc.2005.10.172
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
We have identified aptamers (synthetic oligonucleotides) binding to the very small molecule ethanolamine with high affinity down to the low nanomolar range. These aptamers were selected for their ability to bind to ethanolamine immobilised on magnetic beads, from an 96mer library of initially about 1 x 10(16) randomised ssDNA molecules. The dissociation constants of these aptamers range between K-D = 6 and KD = 19 nmol L-1. The aim of the development of ethanolamine aptamers is their use for the detection of this substance in clinical and environmental analysis. Ethanolamine is associated with several diseases. Moreover, ethanolamine and its derivatives di- and tri-ethanolamine are used in chemical and cosmetic industries. The use of biosensors with ethanolamine aptamer as new molecular recognition element could be an innovative method for an easy and fast detection of ethanolamine. (c) 2005 Elsevier Inc. All rights reserved.
引用
收藏
页码:1928 / 1934
页数:7
相关论文
共 15 条
[1]   3 SMALL RIBOOLIGONUCLEOTIDES WITH SPECIFIC ARGININE SITES [J].
CONNELL, GJ ;
ILLANGESEKARE, M ;
YARUS, M .
BIOCHEMISTRY, 1993, 32 (21) :5497-5502
[2]   DNA aptamers derived from HIV-1 RNase H inhibitors are strong anti-integrase agents [J].
de Soultrait, VR ;
Lozach, PY ;
Altmeyer, R ;
Tarrago-Litvak, L ;
Litvak, S ;
Andréola, ML .
JOURNAL OF MOLECULAR BIOLOGY, 2002, 324 (02) :195-203
[3]   INVITRO SELECTION OF RNA MOLECULES THAT BIND SPECIFIC LIGANDS [J].
ELLINGTON, AD ;
SZOSTAK, JW .
NATURE, 1990, 346 (6287) :818-822
[4]   MOLECULAR RECOGNITION OF AMINO-ACIDS BY RNA-APTAMERS - AN L-CITRULLINE BINDING RNA MOTIF AND ITS EVOLUTION INTO AN L-ARGININE BINDER [J].
FAMULOK, M .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1994, 116 (05) :1698-1706
[5]   Membrane phospholipid alterations in Alzheimer's disease: Deficiency of ethanolamine plasmalogens [J].
Farooqui, AA ;
Rapoport, SI ;
Horrocks, LA .
NEUROCHEMICAL RESEARCH, 1997, 22 (04) :523-527
[6]   RNA aptamers that bind L-arginine with sub-micromolar dissociation constants and high enantioselectivity [J].
Geiger, A ;
Burgstaller, P ;
vonderEltz, H ;
Roeder, A ;
Famulok, M .
NUCLEIC ACIDS RESEARCH, 1996, 24 (06) :1029-1036
[7]   The membrane phospholipid hypothesis as a biochemical basis for the neurodevelopmental concept of schizophrenia [J].
Horrobin, DF .
SCHIZOPHRENIA RESEARCH, 1998, 30 (03) :193-208
[8]   In vitro selection of hematoporphyrin binding DNA aptamers [J].
Okazawa, A ;
Maeda, H ;
Fukusaki, E ;
Katakura, Y ;
Kobayashi, A .
BIOORGANIC & MEDICINAL CHEMISTRY LETTERS, 2000, 10 (23) :2653-2656
[9]   ISOLATION OF VIRUS-NEUTRALIZING RNAS FROM A LARGE POOL OF RANDOM SEQUENCES [J].
PAN, WH ;
CRAVEN, RC ;
QIU, Q ;
WILSON, CB ;
WILLS, JW ;
GOLOVINE, S ;
WANG, JF .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1995, 92 (25) :11509-11513
[10]   G-quadruplex DNA structures - Variations on a theme [J].
Simonsson, T .
BIOLOGICAL CHEMISTRY, 2001, 382 (04) :621-628