Why plant volatile analysis needs bioinformatics - detecting signal from noise in increasingly complex profiles

被引:53
作者
van Dam, N. M. [1 ]
Poppy, G. M. [2 ]
机构
[1] Netherlands Inst Ecol NIOO KNAW, Multitroph Interact Dept, NL-6666 ZG Heteren, Netherlands
[2] Univ Southampton, Sch Biol Sci, Southampton SO16 7PX, Hants, England
基金
英国生物技术与生命科学研究理事会;
关键词
chemical ecology; induced responses; insect-plant interactions; plant metabolomics; multitrophic interactions; multivariate analysis; natural enemies; plant volatile analysis; volatile organic compounds;
D O I
10.1055/s-2007-964961
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
Plant volatile analysis may be the oldest form of what now is called plant "metabolomic" analysis. A wide array of volatile organic compounds (VOCs), such as alkanes, alcohols, isoprenoids, and esters, can be collected simultaneously from the plant headspace, either within the laboratory or in the field. Increasingly faster and more sensitive analysis techniques allow detection of an ever-growing number of compounds in decreasing concentrations. However, the myriads of data becoming available from such experiments do not automatically increase our ecological and evolutionary understanding of the roles these VOCs play in plant-insect interactions. Herbivores and parasitoids responding to changes in VOC emissions are able to perceive minute changes within a complex VOC background. Plants modified in genes involved in VOC synthesis may be valuable for the evaluation of changes in plant-animal interactions compared to tests with synthetic compounds, as they allow changes to be made within the context of a more complex profile. We argue that bioinformatics is an essential tool to integrate statistical analysis of plant VOC profiles with insect behavioural data. The implementation of statistical techniques such as multivariate analysis (MVA) and meta-analysis is of the utmost importance to interpreting changes in plant VOC mixtures. MVA focuses on differences in volatile patterns rather than in single compounds. Therefore, it more closely resembles the information processing in insects that base their behavioural decisions on differences in VOC profiles between plants. Meta-analysis of different datasets will reveal general patterns pertaining to the ecological role of VOC in plant-insect interactions. Successful implementation of bioinformatics in VOC research also includes the development of MVA that integrate time-resolved chemical and behavioural analyses, as well as databases that link plant VOCs to their effects on insects.
引用
收藏
页码:29 / 37
页数:9
相关论文
共 88 条
[81]  
TINBERGEN N, 1953, TIERNAHRUNG FUTTERMI, V20, P410
[82]   EXPLOITATION OF HERBIVORE-INDUCED PLANT ODORS BY HOST-SEEKING PARASITIC WASPS [J].
TURLINGS, TCJ ;
TUMLINSON, JH ;
LEWIS, WJ .
SCIENCE, 1990, 250 (4985) :1251-1253
[83]   Conflicting interests of plants and the natural enemies of herbivores [J].
van der Meijden, E ;
Klinkhamer, PGL .
OIKOS, 2000, 89 (01) :202-208
[84]  
van Loon JJA, 2000, ENTOMOL EXP APPL, V97, P219, DOI 10.1046/j.1570-7458.2000.00733.x
[85]   Olfactory responses of the vine weevil, Otiorhynchus sulcatus, to tree odours [J].
Van Tol, RWHM ;
Visser, JH ;
Sabelis, MW .
PHYSIOLOGICAL ENTOMOLOGY, 2002, 27 (03) :213-222
[86]   From chemical to population ecology: Infochemical use in an evolutionary context [J].
Vet, LEM .
JOURNAL OF CHEMICAL ECOLOGY, 1999, 25 (01) :31-49
[87]  
VET LEM, 1991, NETH J ZOOL, V41, P202
[88]   Herbivore-induced ethylene burst reduces fitness costs of jasmonate- and oral secretion-induced defenses in Nicotiana attenuata [J].
Voelckel, C ;
Schittko, U ;
Baldwin, IT .
OECOLOGIA, 2001, 127 (02) :274-280