Cyanobacterial postgenomic research and systems biology

被引:39
作者
Burja, AM
Dhamwichukorn, S
Wright, PC
机构
[1] Univ Sheffield, Dept Chem & Proc Engn, Biol & Environm Syst Grp, Sheffield S1 3JD, S Yorkshire, England
[2] Univ Notre Dame, Ctr Environm Sci & Technol, Notre Dame, IN 46556 USA
基金
英国工程与自然科学研究理事会;
关键词
D O I
10.1016/j.tibtech.2003.08.008
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
The genomic era brought with it the capacity to unlock complex interactions in organisms and biological systems. Currently, by exploiting genomic and associated protein information through in silico analyses, post-genomic research is developing rapidly. This field, which encompasses functional genomics, structural genomics, transcriptomics, pharmacogenomics, proteomics and metabolomics, allows for a systems-wide approach to biological studies. To date, bacterial post-genomic research has focused mainly on a few representative pathogenic species, leaving the vast majority of the microbial community relatively overlooked. Amongst the under-represented microorganisms are the cyanobacteria, which are important for their beneficial natural product production, bioremediation and energy applications. Here, we highlight the current status of cyanobacterial postgenomic research and assess the potential for future metabolic engineering and 'cell factory' or 'microbial cell' development.
引用
收藏
页码:504 / 511
页数:8
相关论文
共 77 条
[1]   Salt stress inhibits the repair of photodamaged photosystem II by suppressing the transcription and translation of psbA genes in Synechocystis [J].
Allakhverdiev, SI ;
Nishiyama, Y ;
Miyairi, S ;
Yamamoto, H ;
Inagaki, N ;
Kanesaki, Y ;
Murata, N .
PLANT PHYSIOLOGY, 2002, 130 (03) :1443-1453
[2]  
ALTSCHUL SF, 1990, J MOL BIOL, V215, P403, DOI 10.1006/jmbi.1990.9999
[3]   Microarray transcription profiling of a Shewanella oneidensis etrA mutant [J].
Beliaev, AS ;
Thompson, DK ;
Fields, MW ;
Wu, LY ;
Lies, DP ;
Nealson, KH ;
Zhou, JZ .
JOURNAL OF BACTERIOLOGY, 2002, 184 (16) :4612-4616
[4]   The Protein Data Bank [J].
Berman, HM ;
Battistuz, T ;
Bhat, TN ;
Bluhm, WF ;
Bourne, PE ;
Burkhardt, K ;
Iype, L ;
Jain, S ;
Fagan, P ;
Marvin, J ;
Padilla, D ;
Ravichandran, V ;
Schneider, B ;
Thanki, N ;
Weissig, H ;
Westbrook, JD ;
Zardecki, C .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2002, 58 :899-907
[5]   Genomes OnLine Database (GOLD): a monitor of genome projects world-wide [J].
Bernal, A ;
Ear, U ;
Kyrpides, N .
NUCLEIC ACIDS RESEARCH, 2001, 29 (01) :126-127
[6]   Assessing the impact of Plasmodium falciparum genome sequencing [J].
Bowman, S ;
Horrocks, P .
MICROBES AND INFECTION, 2000, 2 (12) :1479-1487
[7]  
BURJA A, 2003, SIM NEWS, V53, P4
[8]   Marine cyanobacteria - a prolific source of natural products [J].
Burja, AM ;
Banaigs, B ;
Abou-Mansour, E ;
Burgess, JG ;
Wright, PC .
TETRAHEDRON, 2001, 57 (46) :9347-9377
[9]  
Castiglioni B, 2002, MINERVA BIOTECNOL, V14, P253
[10]   Quantitative detection of microbial genes by using DNA microarrays [J].
Cho, JC ;
Tiedje, JM .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2002, 68 (03) :1425-1430