Preorganized secondary structure as an important determinant of fast protein folding

被引:205
作者
Myers, JK [1 ]
Oas, TG [1 ]
机构
[1] Duke Univ, Med Ctr, Dept Biochem, Durham, NC 27710 USA
基金
美国国家卫生研究院;
关键词
D O I
10.1038/88626
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The folding and unfolding kinetics of the B-domain of staphylococcal protein A, a small three-helix bundle protein, were probed by NMR. The lineshape of a single histidine resonance was fit as a function of denaturant to give folding and unfolding rate constants. The B-domain folds extremely rapidly in a two-state manner, with a folding rate constant of 120,000 s(-1), making it one of the fastest-folding proteins known. Diffusion-collision theory predicts folding and unfolding rate constants that are in good agreement with the experimental values. The apparent rate constant as a function of denaturant ('chevron plot') is predicted within an order of magnitude. Our results are consistent with a model whereby fast-folding proteins utilize a diffusion-collision mechanism, with the preorganization of one or more elements of secondary structure in the unfolded protein.
引用
收藏
页码:552 / 558
页数:7
相关论文
共 61 条
[1]   Prediction of protein-folding mechanisms from free-energy landscapes derived from native structures [J].
Alm, E ;
Baker, D .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1999, 96 (20) :11305-11310
[2]   Matching theory and experiment in protein folding [J].
Alm, E ;
Baker, D .
CURRENT OPINION IN STRUCTURAL BIOLOGY, 1999, 9 (02) :189-196
[3]   Staphylococcal protein A: Unfolding pathways, unfolded states, and differences between the B and E domains [J].
Alonso, DOV ;
Daggett, V .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2000, 97 (01) :133-138
[4]   Absence of a stable intermediate on the folding pathway of protein A [J].
Bai, YW ;
Karimi, A ;
Dyson, HJ ;
Wright, PE .
PROTEIN SCIENCE, 1997, 6 (07) :1449-1457
[5]   Protein folding from 1961 to 1982 [J].
Baldwin, RL .
NATURE STRUCTURAL BIOLOGY, 1999, 6 (09) :814-817
[6]   Is protein folding hierarchic? II. Folding intermediates and transition states [J].
Baldwin, RL ;
Rose, GD .
TRENDS IN BIOCHEMICAL SCIENCES, 1999, 24 (02) :77-83
[7]   Is protein folding hierarchic? I. Local structure and peptide folding [J].
Baldwin, RL ;
Rose, GD .
TRENDS IN BIOCHEMICAL SCIENCES, 1999, 24 (01) :26-33
[8]   DIFFUSION-COLLISION MODEL FOR THE FOLDING KINETICS OF MYOGLOBIN [J].
BASHFORD, D ;
COHEN, FE ;
KARPLUS, M ;
KUNTZ, ID ;
WEAVER, DL .
PROTEINS-STRUCTURE FUNCTION AND GENETICS, 1988, 4 (03) :211-227
[9]   ALASKA:: A Mathematica package for two-state kinetic analysis of protein folding reactions [J].
Burton, RE ;
Busby, RS ;
Oas, TG .
JOURNAL OF BIOMOLECULAR NMR, 1998, 11 (03) :355-359
[10]   Protein folding dynamics: Quantitative comparison between theory and experiment [J].
Burton, RE ;
Myers, JK ;
Oas, TG .
BIOCHEMISTRY, 1998, 37 (16) :5337-5343