Noncoding plastid trnT-trnF sequences reveal a well resolved phylogeny of basal angiosperms

被引：296

作者：

Borsch, T

Hilu, KW

Quandt, D

Wilde, V

Neinhuis, C

Barthlott, W

机构：

[1] Univ Bonn, Inst Bot, D-53115 Bonn, Germany

[2] Univ Bonn, Bot Garten, D-53115 Bonn, Germany

[3] Virginia Polytech Inst & State Univ, Dept Biol, Blacksburg, VA 24061 USA

[4] Forschungsinst Senckenberg, Frankfurt, Germany

来源：

JOURNAL OF EVOLUTIONARY BIOLOGY | 2003年 / 16卷 / 04期

关键词：

angiosperms; chloroplast genome; group I intron; molecular evolution; noncoding DNA; phylogeny; secondary structure; trnT-trnF;

D O I：

10.1046/j.1420-9101.2003.00577.x

中图分类号：

Q14 [生态学（生物生态学）];

学科分类号：

071012 ; 0713 ;

摘要：

Recent contributions from DNA sequences have revolutionized our concept of systematic relationships in angiosperms. However, parts of the angiosperm tree remain unclear. Previous studies have been based on coding or rDNA regions of relatively conserved genes. A phylogeny for basal angiosperms based on noncoding, fast-evolving sequences of the chloroplast genome region trnT-trnF is presented. The recognition of simple direct repeats allowed a robust alignment. Mutational hot spots appear to be confined to certain sectors, as in two stem-loop regions of the trnL intron secondary structure. Our highly resolved and well-supported phylogeny depicts the New Caledonian Amborella as the sister to all other angiosperms, followed by Nymphaeaceae and an Austrobaileya -Illicium -Schisandra clade. Ceratophyllum is substantiated as a close relative of monocots, as is a monophyletic eumagnoliid clade consisting of Piperales plus Winterales sister to Laurales plus Magnoliales. Possible reasons for the striking congruence between the trnT-trnF based phylogeny and phylogenies generated from combined multi-gene, multi-genome data are discussed.

引用

页码：558 / 576

页数：19

共 102 条

[11]

BORSCH T, 2000, THESIS U BONN BONN

[12] Phylogeny of seed plants based on all three genomic compartments: Extant gymnosperms are monophyletic and Gnetales' closest relatives are conifers [J].

Bowe, LM ;

Coat, G ;

dePamphilis, CW .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2000, 97 (08) :4092-4097

[13]

Bremer K, 1998, ANN MO BOT GARD, V85, P531, DOI 10.2307/2992015

[14] Early Cretaceous lineages of monocot flowering plants [J].

Bremer, K .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2000, 97 (09) :4707-4711

[15] CONSERVED SEQUENCES AND STRUCTURES OF GROUP-I INTRONS - BUILDING AN ACTIVE-SITE FOR RNA CATALYSIS - A REVIEW [J].

CECH, TR .

GENE, 1988, 73 (02) :259-271

[16] REPRESENTATION OF THE SECONDARY AND TERTIARY STRUCTURE OF GROUP-I INTRONS [J].

CECH, TR ;

DAMBERGER, SH ;

GUTELL, RR .

NATURE STRUCTURAL BIOLOGY, 1994, 1 (05) :273-280

[17]

Chase M.W., 2000, Monocots: Systematics and evolution, P3

[18] PHYLOGENETICS OF SEED PLANTS - AN ANALYSIS OF NUCLEOTIDE-SEQUENCES FROM THE PLASTID GENE RBCL [J].

CHASE, MW ;

SOLTIS, DE ;

OLMSTEAD, RG ;

MORGAN, D ;

LES, DH ;

MISHLER, BD ;

DUVALL, MR ;

PRICE, RA ;

HILLS, HG ;

QIU, YL ;

KRON, KA ;

RETTIG, JH ;

CONTI, E ;

PALMER, JD ;

MANHART, JR ;

SYTSMA, KJ ;

MICHAELS, HJ ;

KRESS, WJ ;

KAROL, KG ;

CLARK, WD ;

HEDREN, M ;

GAUT, BS ;

JANSEN, RK ;

KIM, KJ ;

WIMPEE, CF ;

SMITH, JF ;

FURNIER, GR ;

STRAUSS, SH ;

XIANG, QY ;

PLUNKETT, GM ;

SOLTIS, PS ;

SWENSEN, SM ;

WILLIAMS, SE ;

GADEK, PA ;

QUINN, CJ ;

EGUIARTE, LE ;

GOLENBERG, E ;

LEARN, GH ;

GRAHAM, SW ;

BARRETT, SCH ;

DAYANANDAN, S ;

ALBERT, VA .

ANNALS OF THE MISSOURI BOTANICAL GARDEN, 1993, 80 (03) :528-580

[19] Seed plant phylogeny inferred from all three plant genomes: Monophyly of extant gymnosperms and origin of Gnetales from conifers [J].

Chaw, SM ;

Parkinson, CL ;

Cheng, YC ;

Vincent, TM ;

Palmer, JD .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2000, 97 (08) :4086-4091

[20] RATES AND PATTERNS OF CHLOROPLAST DNA EVOLUTION [J].

CLEGG, MT ;

GAUT, BS ;

LEARN, GH ;

MORTON, BR .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1994, 91 (15) :6795-6801

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