Proteome diversification by adenosine to inosine RNA-editing

被引:53
作者
Pullirsch, Dieter [1 ]
Jantsch, Michael F. [1 ]
机构
[1] Univ Vienna, Max F Perutz Labs, Dept Chromosome Biol, Vienna, Austria
基金
奥地利科学基金会;
关键词
RNA editing; ADAR; RNA processing; filamin; inosine; DYSCHROMATOSIS SYMMETRICA HEREDITARIA; GLUTAMATE-RECEPTOR CHANNELS; HUMAN BLADDER-CANCER; MESSENGER-RNA; AMPA RECEPTORS; ION FLOW; HUMAN TRANSCRIPTOME; HUMAN GLIOBLASTOMA; C1Q-RELATED FACTOR; LATERAL-SCLEROSIS;
D O I
10.4161/rna.7.2.11286
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Nucleotide deamination is a widespread phenomenon frequently leading to a change of the genetic information. Adenosine deaminases that act on RNA (ADARs) convert adenosines to inosines in double-stranded or structured regions of RNAs. Inosines are interpreted as guanosines by most cellular processes and hence, this type of modification can affect the coding potential of an RNA but also its splicing, folding or stability, to name a few. While originally believed to be a rare event recent bioinformatic screens have demonstrated that RNA-editing by ADARs is widespread and very abundant in mammals. From these screens, editing sites were discovered in both coding and non-coding regions of mRNAs. In this review we focus on RNA-editing events that alter the coding potential of mRNAs and hence lead to the formation of proteins that differ from their genomically encoded versions. We will therefore discuss the role of ADARs in proteome diversification, in particular in the nervous system where editing is most abundant.
引用
收藏
页码:205 / 212
页数:8
相关论文
共 111 条
[1]   M phase phosphoprotein 1 is a human plus-end-directed kinesin-related protein required for cytokinesis [J].
Abaza, A ;
Soleilhac, JM ;
Westendorf, J ;
Piel, M ;
Crevel, I ;
Roux, A ;
Pirollet, F .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2003, 278 (30) :27844-27852
[2]   Dendrite development regulated by CREST, a calcium-regulated transcriptional activator [J].
Aizawa, H ;
Hu, SC ;
Bobb, K ;
Balakrishnan, K ;
Ince, G ;
Gurevich, I ;
Cowan, M ;
Ghosh, A .
SCIENCE, 2004, 303 (5655) :197-202
[3]   Widespread A-to-I RNA editing of alu-containing mRNAs in the human transcriptome [J].
Athanasiadis, A ;
Rich, A ;
Maas, S .
PLOS BIOLOGY, 2004, 2 (12) :2144-2158
[4]   Distribution of zinedin in the rat brain [J].
Benoist, Marion ;
Baude, Agnes ;
Tasmadjian, Armand ;
Dargent, Benedicte ;
Kessler, Jean-Pierre ;
Castets, Francis .
JOURNAL OF NEUROCHEMISTRY, 2008, 106 (02) :969-977
[5]   Cloning and characterization of CRF, a novel C1q-related factor, expressed in areas of the brain involved in motor function [J].
Bérubé, NG ;
Swanson, XH ;
Bertram, MJ ;
Kittle, JD ;
Didenko, V ;
Baskin, DS ;
Smith, JR ;
Pereira-Smith, OM .
MOLECULAR BRAIN RESEARCH, 1999, 63 (02) :233-240
[6]   Control of human potassium channel inactivation by editing of a small mRNA hairpin [J].
Bhalla, T ;
Rosenthal, JJC ;
Holmgren, M ;
Reenan, R .
NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2004, 11 (10) :950-956
[7]   A survey of RNA editing in human brain [J].
Blow, M ;
Futreal, PA ;
Wooster, R ;
Stratton, MR .
GENOME RESEARCH, 2004, 14 (12) :2379-2387
[8]   Adenosine deamination in human transcripts generates novel microRNA binding sites [J].
Borchert, Glen M. ;
Gilmore, Brian L. ;
Spengler, Ryan M. ;
Xing, Yi ;
Lanier, William ;
Bhattacharya, Debashish ;
Davidson, Beverly L. .
HUMAN MOLECULAR GENETICS, 2009, 18 (24) :4801-4807
[9]  
BREVING K, 2009, INT J BIOCH CELL BIO
[10]  
Brinkkoetter P.T., 2009, J Clin Invest