A systems biology perspective on plant-microbe interactions: Biochemical and structural targets of pathogen effectors

被引:45
作者
Pritchard, Leighton [2 ]
Birch, Paul [1 ,2 ]
机构
[1] SCRI, Univ Dundee, Div Plant Sci, Dundee DD2 5DA, Scotland
[2] SCRI, Plant Pathol Programme, Dundee DD2 5DA, Scotland
基金
英国生物技术与生命科学研究理事会;
关键词
Pathogen; Effector; Network; Systems biology; Modelling; PSEUDOMONAS-SYRINGAE; SACCHAROMYCES-CEREVISIAE; DISEASE-RESISTANCE; NETWORK MOTIFS; CONNECTIVITY STRUCTURE; BACTERIAL VIRULENCE; FUNCTIONAL GENOMICS; REGULATORY NETWORKS; DEFENSE RESPONSES; ESCHERICHIA-COLI;
D O I
10.1016/j.plantsci.2010.12.008
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Plants have biochemical defences against stresses from predators, parasites and pathogens. In this review we discuss the interaction of plant defences with microbial pathogens such as bacteria, fungi and oomycetes, and viruses. We examine principles of complex dynamic networks that allow identification of network components that are differentially and predictably sensitive to perturbation, thus making them likely effector targets. We relate these principles to recent developments in our understanding of known effector targets in plant-pathogen systems, and propose a systems-level framework for the interpretation and modelling of host-microbe interactions mediated by effectors. We describe this framework briefly, and conclude by discussing useful experimental approaches for populating this framework. (C) 2010 Elsevier Ireland Ltd. All rights reserved.
引用
收藏
页码:584 / 603
页数:20
相关论文
共 191 条
[1]   Pseudomonas type III effector AvrPtoB induces plant disease susceptibility by inhibition of host programmed cell death [J].
Abramovitch, RB ;
Kim, YJ ;
Chen, SR ;
Dickman, MB ;
Martin, GB .
EMBO JOURNAL, 2003, 22 (01) :60-69
[2]   From Grazing Resistance to Pathogenesis: The Coincidental Evolution of Virulence Factors [J].
Adiba, Sandrine ;
Nizak, Clement ;
van Baalen, Minus ;
Denamur, Erick ;
Depaulis, Frantz .
PLOS ONE, 2010, 5 (08)
[3]  
Aickelin U, 2003, LECT NOTES COMPUT SC, V2787, P147
[4]   Scale-free networks in cell biology [J].
Albert, R .
JOURNAL OF CELL SCIENCE, 2005, 118 (21) :4947-4957
[5]   Error and attack tolerance of complex networks [J].
Albert, R ;
Jeong, H ;
Barabási, AL .
NATURE, 2000, 406 (6794) :378-382
[6]   Network inference, analysis, and modeling in systems biology [J].
Albert, Reke .
PLANT CELL, 2007, 19 (11) :3327-3338
[7]   Host-parasite coevolutionary conflict between Arabidopsis and downy mildew [J].
Allen, RL ;
Bittner-Eddy, PD ;
Grenvitte-Briggs, LJ ;
Meitz, JC ;
Rehmany, AP ;
Rose, LE ;
Beynon, JL .
SCIENCE, 2004, 306 (5703) :1957-1960
[8]   Network motifs: theory and experimental approaches [J].
Alon, Uri .
NATURE REVIEWS GENETICS, 2007, 8 (06) :450-461
[9]  
Alon Uri, 2006, An Introduction to Systems Biology: Design Principles of Biological Circuits
[10]   Revealing differences in gene network inference algorithms on the network level by ensemble methods [J].
Altay, Goekmen ;
Emmert-Streib, Frank .
BIOINFORMATICS, 2010, 26 (14) :1738-1744