The calorimetric criterion for a two-state process revisited

被引:97
作者
Zhou, YQ
Hall, CK
Karplus, M
机构
[1] Harvard Univ, Dept Chem & Biol Chem, Cambridge, MA 02138 USA
[2] N Carolina State Univ, Dept Chem Engn, Raleigh, NC 27695 USA
[3] Univ Strasbourg 1, Inst Le Bel, ISIS, Lab Chim Biophys, F-67000 Strasbourg, France
关键词
calorimetric criterion; free-energy barrier; protein folding; simple models; two-state transition;
D O I
10.1110/ps.8.5.1064
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The "calorimetric criterion" is one of the important experimental approaches for determining whether protein folding is an "all-or-none" two-state transition (i.e., whether intermediates are present at equilibrium). The calorimetric criterion states that the equivalence of the "measured" calorimetric enthalpy change and the effective two-state van't Hoff enthalpy change demonstrates that there is a two-stale transition. This paper addresses the essential question of whether the calorimetric criterion is a necessary and sufficient condition for a two-state process and shows that it is necessary but not sufficient by means of specific examples. Analysis of simple models indicates that the heat capacity curve, regardless of whether ii originates from a two-state process or not, can always be decomposed in such a way that the calorimetric criterion is satisfied. Exact results for a three-state model and a homopolymer tetramer demonstrate that the deviation from the calorimetric criterion is not simply related to the population of intermediate states. Analysis of a three-helix bundle protein model, which has a two-state folding from a random coil to ordered (molten) globule, shows that the calorimetric criterion may not be satisfied if the standard linear interpolation of baselines (weighted or unweighted) is employed. A specific example also suggests that the more recently introduced deconvolution method is not necessarily better than the simple calorimetric criterion for distinguishing a two-state transition from a three-state transition. Although the calorimetric criterion is not a sufficient condition for a two-state process, it is likely to continue to be of practical utility, particularly when its results are shown to be consistent with those from other experimental methods.
引用
收藏
页码:1064 / 1074
页数:11
相关论文
共 50 条
[1]   KALORIMETRISCHE MESSUNGEN ZUR HELIX-COIL-UMWANDLUNG VON NUCLEINSAUREN UND SYNTHETISCHEN POLYPEPTIDEN IN LOSUNG [J].
ACKERMANN, T ;
RUTERJAN.H .
BERICHTE DER BUNSEN-GESELLSCHAFT FUR PHYSIKALISCHE CHEMIE, 1964, 68 (8-9) :850-+
[2]   THERMODYNAMIC ANALYSIS OF THE FOLDING OF THE STREPTOCOCCAL PROTEIN-G IGG-BINDING DOMAINS B1 AND B2 - WHY SMALL PROTEINS TEND TO HAVE HIGH DENATURATION TEMPERATURES [J].
ALEXANDER, P ;
FAHNESTOCK, S ;
LEE, T ;
ORBAN, J ;
BRYAN, P .
BIOCHEMISTRY, 1992, 31 (14) :3597-3603
[3]  
[Anonymous], 1954, KINETIC BASIS MOL BI
[4]   The equilibrium between active native trypsin and inactive denatured trypsin [J].
Anson, ML ;
Mirsky, AE .
JOURNAL OF GENERAL PHYSIOLOGY, 1934, 17 (03) :393-398
[5]   HEAT OF TRANSITION OF RIBONUCLEASE A [J].
BECK, K ;
GILL, SJ ;
DOWNING, M .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1965, 87 (04) :901-&
[6]   APPLICATION OF A MODIFIED GENERALIZED FLORY DIMER THEORY TO NORMAL-ALKANES [J].
BOKIS, CP ;
DONOHUE, MD ;
HALL, CK .
INDUSTRIAL & ENGINEERING CHEMISTRY RESEARCH, 1994, 33 (05) :1290-1298
[7]   MODELS OF COOPERATIVITY IN PROTEIN-FOLDING [J].
CHAN, HS ;
BROMBERG, S ;
DILL, KA .
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 1995, 348 (1323) :61-70
[8]  
CHEN W, 1989, J VASC MED BIOL, V1, P2
[9]   THERMODYNAMIC PROPERTIES OF THE TRANSITION-STATE FOR THE RATE-LIMITING STEP IN THE FOLDING OF THE ALPHA-SUBUNIT OF TRYPTOPHAN SYNTHASE [J].
CHEN, XW ;
MATTHEWS, CR .
BIOCHEMISTRY, 1994, 33 (20) :6356-6362
[10]  
Creighton T E, 1986, Methods Enzymol, V131, P156