Versatility, stability, and evolution of the (βα)8-barrel enzyme fold

被引:162
作者
Sterner, R
Höcker, B
机构
[1] Univ Regensburg, Inst Biophys & Phys Biochem, D-93053 Regensburg, Germany
[2] Duke Univ, Med Ctr, Dept Biochem, Durham, NC 27710 USA
关键词
D O I
10.1021/cr030191z
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
The canonical (βα)8-barrel also known as TIM barrel, contains about 200 amino acids and is composed of eight units consisting of a β-strand and an α-helix that are connected by βα-loop. Structures of sample barrels were analyzed which determines the (βα)8-barrel's stability. Residues were assumed to be important for stability depending on their involvement in long-range interactions, the hydrophobicity of the environment and its conservation. To maintain the stability of the (βα)8-barrel fold, about 180 out of the 250 sequence positions within yeast TIM were randomized using combinatorial mutagenesis. The (βα)8-barrel is catalytically versatile, and harbors active sites with high functional and structural plasticity which makes it an ideal scaffold for the design of new catalytic activities, either by rational design or by directed laboratory evolution.
引用
收藏
页码:4038 / 4055
页数:18
相关论文
共 160 条
[1]   The structure of L-hydantoinase from Arthobacter aurescens leads to an understanding of dihydropyrimidinase substrate and enantio specificity [J].
Abendroth, J ;
Niefind, K ;
May, O ;
Siemann, M ;
Syldatk, C ;
Schomburg, D .
BIOCHEMISTRY, 2002, 41 (27) :8589-8597
[2]   Structural framework for catalysis and regulation in ribulose-1,5-bisphosphate carboxylase/oxygenase [J].
Andersson, I ;
Taylor, TC .
ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS, 2003, 414 (02) :130-140
[3]   The crystal structure and mechanism of orotidine 5′-monophosphate decarboxylase [J].
Appleby, TC ;
Kinsland, C ;
Begley, TP ;
Ealick, SE .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2000, 97 (05) :2005-2010
[4]  
Babbitt PC, 2001, ADV PROTEIN CHEM, V55, P1, DOI 10.1016/S0065-3233(01)55001-9
[5]   STRUCTURE OF CHICKEN MUSCLE TRIOSE PHOSPHATE ISOMERASE DETERMINED CRYSTALLOGRAPHICALLY AT 2.5A RESOLUTION USING AMINO-ACID SEQUENCE DATA [J].
BANNER, DW ;
BLOOMER, AC ;
PETSKO, GA ;
PHILLIPS, DC ;
POGSON, CI ;
WILSON, IA ;
CORRAN, PH ;
FURTH, AJ ;
MILMAN, JD ;
OFFORD, RE ;
PRIDDLE, JD ;
WALEY, SG .
NATURE, 1975, 255 (5510) :609-614
[6]   Occurrence of a putative ancient-like isomerase involved in histidine and tryptophan biosynthesis [J].
Barona-Gómez, F ;
Hodgson, DA .
EMBO REPORTS, 2003, 4 (03) :296-300
[7]   SPECTROSCOPIC INVESTIGATION OF STRUCTURE IN OCTARELLIN (A DENOVO PROTEIN DESIGNED TO ADOPT THE ALPHA-BETA-BARREL PACKING) [J].
BEAUREGARD, M ;
GORAJ, K ;
GOFFIN, V ;
HEREMANS, K ;
GOORMAGHTIGH, E ;
RUYSSCHAERT, JM ;
MARTIAL, JA .
PROTEIN ENGINEERING, 1991, 4 (07) :745-749
[8]   Imidazole glycerol phosphate synthase from Thermotoga maritima -: Quaternary structure, steady-state kinetics, and reaction mechanism of the bienzyme complex [J].
Beismann-Driemeyer, S ;
Sterner, R .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2001, 276 (23) :20387-20396
[9]   COMPLEMENTATION OF FRAGMENTS OF TRIOSEPHOSPHATE ISOMERASE DEFINED BY EXON BOUNDARIES [J].
BERTOLAET, BL ;
KNOWLES, JR .
BIOCHEMISTRY, 1995, 34 (17) :5736-5743
[10]   Cross-talk and ammonia channeling between active centers in the unexpected domain arrangement of glutamate synthase [J].
Binda, C ;
Bossi, RT ;
Wakatsuki, S ;
Arzt, S ;
Coda, A ;
Curti, B ;
Vanoni, MA ;
Mattevi, A .
STRUCTURE, 2000, 8 (12) :1299-1308