Versatility, stability, and evolution of the (βα)8-barrel enzyme fold

被引:162
作者
Sterner, R
Höcker, B
机构
[1] Univ Regensburg, Inst Biophys & Phys Biochem, D-93053 Regensburg, Germany
[2] Duke Univ, Med Ctr, Dept Biochem, Durham, NC 27710 USA
关键词
D O I
10.1021/cr030191z
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
The canonical (βα)8-barrel also known as TIM barrel, contains about 200 amino acids and is composed of eight units consisting of a β-strand and an α-helix that are connected by βα-loop. Structures of sample barrels were analyzed which determines the (βα)8-barrel's stability. Residues were assumed to be important for stability depending on their involvement in long-range interactions, the hydrophobicity of the environment and its conservation. To maintain the stability of the (βα)8-barrel fold, about 180 out of the 250 sequence positions within yeast TIM were randomized using combinatorial mutagenesis. The (βα)8-barrel is catalytically versatile, and harbors active sites with high functional and structural plasticity which makes it an ideal scaffold for the design of new catalytic activities, either by rational design or by directed laboratory evolution.
引用
收藏
页码:4038 / 4055
页数:18
相关论文
共 160 条
[51]   Stability, catalytic versatility and evolution of the (βα)8-barrel fold [J].
Höcker, B ;
Jürgens, C ;
Wilmanns, M ;
Sterner, R .
CURRENT OPINION IN BIOTECHNOLOGY, 2001, 12 (04) :376-381
[52]  
Höcker B, 2001, NAT STRUCT BIOL, V8, P32
[53]   ALPHA-HELIX DIPOLE AND PROPERTIES OF PROTEINS [J].
HOL, WGJ ;
VANDUIJNEN, PT ;
BERENDSEN, HJC .
NATURE, 1978, 273 (5662) :443-446
[54]   2ND-GENERATION OCTARELLINS - 2 NEW DE-NOVO (BETA/ALPHA)(8) POLYPEPTIDES DESIGNED FOR INVESTIGATING THE INFLUENCE OF BETA-RESIDUE PACKING ON THE ALPHA/BETA-BARREL STRUCTURE STABILITY [J].
HOUBRECHTS, A ;
MOREAU, B ;
ABAGYAN, R ;
MAINFROID, V ;
PREAUX, G ;
LAMPROYE, A ;
PONCIN, A ;
GOORMAGHTIGH, E ;
RUYSSCHAERT, JM ;
MARTIAL, JA ;
GORAJ, K .
PROTEIN ENGINEERING, 1995, 8 (03) :249-259
[55]  
HYDE CC, 1988, J BIOL CHEM, V263, P17857
[56]   The structure of Escherichia coli cytosine deaminase [J].
Ireton, GC ;
McDermott, G ;
Black, ME ;
Stoddard, BL .
JOURNAL OF MOLECULAR BIOLOGY, 2002, 315 (04) :687-697
[57]   Stabilization of a (βα)8-barrel protein by an engineered disulfide bridge [J].
Ivens, A ;
Mayans, O ;
Szadkowski, H ;
Jürgens, C ;
Wilmanns, M ;
Kirschner, K .
EUROPEAN JOURNAL OF BIOCHEMISTRY, 2002, 269 (04) :1145-1153
[58]   Enantioselective biocatalysis optimized by directed evolution [J].
Jaeger, KE ;
Eggert, T .
CURRENT OPINION IN BIOTECHNOLOGY, 2004, 15 (04) :305-313
[59]   The stability of proteins in extreme environments [J].
Jaenicke, R ;
Böhm, G .
CURRENT OPINION IN STRUCTURAL BIOLOGY, 1998, 8 (06) :738-748
[60]  
Jaenicke Rainer, 2003, Angew Chem Int Ed Engl, V42, P140, DOI 10.1002/anie.200390068