A guide to building image-centric databases

被引:7
作者
Bug, W [1 ]
Nissanov, J [1 ]
机构
[1] Drexel Coll Med, Dept Anat & Neurobiol, Philadelphia, PA 19129 USA
关键词
neuroinformatics; image processmg; processing pipeline; computer-assisted neuroanatomy; LIMS; inter-application cominunication; ontology; digital asset manager; data integration; bioinformatics;
D O I
10.1385/NI:1:4:359
中图分类号
TP39 [计算机的应用];
学科分类号
081203 ; 0835 ;
摘要
There is a paucity of image-centric neuroinformatics infrastructure within the individual investigator's laboratory despite the obvious need for automation and integration of experimental results. Yet, solutions can often be readily built using off-the-shelf databases and associated tools. Doing so simplifies day-to-day research, operation and increases throughput. Proper construction of in-house solutions may also expedite community-wide integration of private and public,data repositories. Here we describe neuroinformatics approaches at different levels of functionality, required expertise, and size of image datasets. The simplest approach coffers ease of image browsing and rudimentary searching. More sophisticated systems provide powerful search capabilities, a means of tracking, analysis, and even automated serial processing pipelines. In this practicum, we provide guidance in selecting among the different options.
引用
收藏
页码:359 / 377
页数:19
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