The tale of RNA G-quadruplex

被引:136
作者
Agarwala, Prachi [1 ,2 ]
Pandey, Satyaprakash [1 ,2 ]
Maiti, Souvik [1 ,2 ,3 ]
机构
[1] CSIR Inst Genom & Integrat Biol, Prote & Struct Biol Unit, Delhi 110007, India
[2] Anusandhan Bhawan, Acad Sci & Innovat Res AcSIR, New Delhi 110001, India
[3] CSIR Natl Chem Lab, Pune 411008, Maharashtra, India
关键词
MENTAL-RETARDATION PROTEIN; REPEAT-CONTAINING RNA; HUMAN TELOMERIC RNA; PRE-MESSENGER-RNA; DNA G-QUADRUPLEX; ESTROGEN-RECEPTOR-ALPHA; STABLE G-QUADRUPLEX; YEAST GENE-PRODUCT; OPEN READING FRAME; G-RICH SEQUENCES;
D O I
10.1039/c4ob02681k
中图分类号
O62 [有机化学];
学科分类号
070303 ; 081704 ;
摘要
G-quadruplexes are non-canonical secondary structures found in guanine rich regions of DNA and RNA. Reports have indicated the wide occurrence of RNA G-quadruplexes across the transcriptome in various regions of mRNAs and non-coding RNAs. RNA G-quadruplexes have been implicated in playing an important role in translational regulation, mRNA processing events and maintenance of chromosomal end integrity. In this review, we summarize the structural and functional aspects of RNA G-quadruplexes with emphasis on recent progress to understand the protein/trans factors binding these motifs. With the revelation of the importance of these secondary structures as regulatory modules in biology, we have also evaluated the various advancements towards targeting these structures and the challenges associated with them. Apart from this, numerous potential applications of this secondary motif have also been discussed.
引用
收藏
页码:5570 / 5585
页数:16
相关论文
共 197 条
[21]  
Biffi G, 2013, NAT CHEM, V5, P182, DOI [10.1038/NCHEM.1548, 10.1038/nchem.1548]
[22]   An Intramolecular G-Quadruplex Structure Is Required for Binding of Telomeric Repeat-Containing RNA to the Telomeric Protein TRF2 [J].
Biffi, Giulia ;
Tannahill, David ;
Balasubramanian, Shankar .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2012, 134 (29) :11974-11976
[23]   Arginines of the RGG box regulate FMRP association with polyribosomes and mRNA [J].
Blackwell, Ernest ;
Zhang, Xing ;
Ceman, Stephanie .
HUMAN MOLECULAR GENETICS, 2010, 19 (07) :1314-1323
[24]   A single internal ribosome entry site containing a G quartet RNA structure drives fibroblast growth factor 2 gene expression at four alternative translation initiation codons [J].
Bonnal, S ;
Schaeffer, C ;
Créancier, L ;
Clamens, S ;
Moine, H ;
Prats, AC ;
Vagner, S .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2003, 278 (41) :39330-39336
[25]   The RNA helicase RHAU (DHX36) unwinds a G4-quadruplex in human telomerase RNA and promotes the formation of the P1 helix template boundary [J].
Booy, E. P. ;
Meier, M. ;
Okun, N. ;
Novakowski, S. K. ;
Xiong, S. ;
Stetefeld, J. ;
McKenna, S. A. .
NUCLEIC ACIDS RESEARCH, 2012, 40 (09) :4110-4124
[26]   The RNA helicase RHAU (DHX36) suppresses expression of the transcription factor PITX1 [J].
Booy, Evan P. ;
Howard, Ryan ;
Marushchak, Oksana ;
Ariyo, Emmanuel O. ;
Meier, Markus ;
Novakowski, Stefanie K. ;
Deo, Soumya R. ;
Dzananovic, Edis ;
Stetefeld, Joerg ;
McKenna, Sean A. .
NUCLEIC ACIDS RESEARCH, 2014, 42 (05) :3346-3361
[27]   Microarray identification of FMRP-associated brain mRNAs and altered mRNA translational profiles in fragile X syndrome [J].
Brown, V ;
Jin, P ;
Ceman, S ;
Darnell, JC ;
O'Donnell, WT ;
Tenenbaum, SA ;
Jin, XK ;
Feng, Y ;
Wilkinson, KD ;
Keene, JD ;
Darnell, RB ;
Warren, ST .
CELL, 2001, 107 (04) :477-487
[28]   5′-UTR RNA G-quadruplexes: translation regulation and targeting [J].
Bugaut, Anthony ;
Balasubramanian, Shankar .
NUCLEIC ACIDS RESEARCH, 2012, 40 (11) :4727-4741
[29]   Small molecule-mediated inhibition of translation by targeting a native RNA G-quadruplex [J].
Bugaut, Anthony ;
Rodriguez, Raphael ;
Kumari, Sunita ;
Hsu, Shang-Te Danny ;
Balasubramanian, Shankar .
ORGANIC & BIOMOLECULAR CHEMISTRY, 2010, 8 (12) :2771-2776
[30]   Quadruplex DNA: sequence, topology and structure [J].
Burge, Sarah ;
Parkinson, Gary N. ;
Hazel, Pascale ;
Todd, Alan K. ;
Neidle, Stephen .
NUCLEIC ACIDS RESEARCH, 2006, 34 (19) :5402-5415