Calculation of helix packing angles in protein structures

被引：25

作者：

Dalton, JAR ^{[1
]}

Michalopoulos, I ^{[1
]}

Westhead, DR ^{[1
]}

机构：

[1] Univ Leeds, Sch Biochem & Mol Biol, Leeds LS2 9JT, W Yorkshire, England

来源：

BIOINFORMATICS | 2003年 / 19卷 / 10期

关键词：

D O I：

10.1093/bioinformatics/btg141

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

Software is presented for the calculation of packing angles and geometry of helical secondary structure elements in protein structures.

引用

页码：1298 / 1299

页数：2

共 10 条

[1] HELANAL: A program to characterize helix geometry in proteins [J].

Bansal, M ;

Kumar, S ;

Velavan, R .

JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2000, 17 (05) :811-819

[2] The Protein Data Bank [J].

Berman, HM ;

Westbrook, J ;

Feng, Z ;

Gilliland, G ;

Bhat, TN ;

Weissig, H ;

Shindyalov, IN ;

Bourne, PE .

NUCLEIC ACIDS RESEARCH, 2000, 28 (01) :235-242

[3] Helix packing angle preferences [J].

Bowie, JU .

NATURE STRUCTURAL BIOLOGY, 1997, 4 (11) :915-917

[4] HELIX TO HELIX PACKING IN PROTEINS [J].

CHOTHIA, C ;

LEVITT, M ;

RICHARDSON, D .

JOURNAL OF MOLECULAR BIOLOGY, 1981, 145 (01) :215-250

[5] DICTIONARY OF PROTEIN SECONDARY STRUCTURE - PATTERN-RECOGNITION OF HYDROGEN-BONDED AND GEOMETRICAL FEATURES [J].

KABSCH, W ;

SANDER, C .

BIOPOLYMERS, 1983, 22 (12) :2577-2637

[6] CATH - a hierarchic classification of protein domain structures [J].

Orengo, CA ;

Michie, AD ;

Jones, S ;

Jones, DT ;

Swindells, MB ;

Thornton, JM .

STRUCTURE, 1997, 5 (08) :1093-1108

[7]

Walther D, 1998, PROTEINS, V33, P457, DOI 10.1002/(SICI)1097-0134(19981201)33:4<457::AID-PROT1>3.0.CO

[8]

2-L

[9] WebMol - A Java']Java-based PDB viewer [J].

Walther, D .

TRENDS IN BIOCHEMICAL SCIENCES, 1997, 22 (07) :274-275

[10] An atlas of protein topology cartoons available on the World-Wide Web [J].

Westhead, DR ;

Hatton, DC ;

Thornton, JM .

TRENDS IN BIOCHEMICAL SCIENCES, 1998, 23 (01) :35-36

← 1 →