JenPep: A novel computational information resource for immunobiology and vaccinology

被引：47

作者：

McSparron, H ^{[1
]}

Blythe, MJ ^{[1
]}

Zygouri, C ^{[1
]}

Doytchinova, IA ^{[1
]}

Flower, DR ^{[1
]}

机构：

[1] Edward Jenner Inst Vaccine Res, Compton RG20 7NN, Berks, England

来源：

JOURNAL OF CHEMICAL INFORMATION AND COMPUTER SCIENCES | 2003年 / 43卷 / 04期

关键词：

D O I：

10.1021/ci030461e

中图分类号：

O6 [化学];

学科分类号：

0703 ;

摘要：

JenPep is a relational database containing a compendium of thermodynamic binding data for the interaction of peptides with a range of important immunological molecules: the major histocompatibility complex, TAP transporter, and T cell receptor. The database also includes annotated lists of B cell and T cell epitopes. Version 2.0 of the database is implemented in a bespoke postgreSQL database system and is fully searchable online via a perl/HTML interface (URL: http://www.jenner.ac.uk/JenPep).

引用

页码：1276 / 1287

页数：12

共 70 条

[31]

Krebs S, 1998, Pharm Acta Helv, V73, P173, DOI 10.1016/S0031-6865(98)00021-1

[32] Rapid epitope identification from complex class-II-restricted T-cell antigens [J].

Kwok, WW ;

Gebe, JA ;

Liu, A ;

Agar, S ;

Ptacek, N ;

Hammer, J ;

Koelle, DM ;

Nepom, GT .

TRENDS IN IMMUNOLOGY, 2001, 22 (11) :583-588

[33] Customized versus universal scoring functions: Application to class I MHC-peptide binding free energy predictions [J].

Logean, A ;

Sette, A ;

Rognan, D .

BIOORGANIC & MEDICINAL CHEMISTRY LETTERS, 2001, 11 (05) :675-679

[34] TAP-Independent presentation of CTL epitopes by trojan antigens [J].

Lu, J ;

Wettstein, PJ ;

Higashimoto, Y ;

Appella, E ;

Celis, E .

JOURNAL OF IMMUNOLOGY, 2001, 166 (12) :7063-7071

[35]

Marsh Steven G. E., 2002, Human Immunology, V63, P1213, DOI 10.1016/S0198-8859(02)00769-3

[36]

MARSHALL KW, 1994, J IMMUNOL, V152, P4946

[37] PEPTIDE BINDING TO MHC CLASS-I MOLECULES - IMPLICATIONS FOR ANTIGENIC PEPTIDE PREDICTION [J].

PARKER, KC ;

SHIELDS, M ;

DIBRINO, M ;

COLIGAN, JE .

IMMUNOLOGIC RESEARCH, 1995, 14 (01) :34-57

[38]

PARKER KC, 1992, J IMMUNOL, V149, P1896

[39] Isothermal titration calorimetry of protein-protein interactions [J].

Pierce, MM ;

Raman, CS ;

Nall, BT .

METHODS-A COMPANION TO METHODS IN ENZYMOLOGY, 1999, 19 (02) :213-221

[40] SYFPEITHI: database for MHC ligands and peptide motifs [J].

Rammensee, HG ;

Bachmann, J ;

Emmerich, NPN ;

Bachor, OA ;

Stevanovic, S .

IMMUNOGENETICS, 1999, 50 (3-4) :213-219

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