Protein structure prediction servers at university college london

被引：597

作者：

Bryson, K ^{[1
]}

McGuffin, LJ ^{[1
]}

Marsden, RL ^{[1
]}

Ward, JJ ^{[1
]}

Sodhi, JS ^{[1
]}

Jones, DT ^{[1
]}

机构：

[1] UCL, Dept Comp Sci, London WC1E 6BT, England

来源：

NUCLEIC ACIDS RESEARCH | 2005年 / 33卷

基金：

英国惠康基金;

关键词：

D O I：

10.1093/nar/gki410

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

A number of state-of-the-art protein structure prediction servers have been developed by researchers working in the Bioinformatics Unit at University College London. The popular PSIPRED server allows users to perform secondary structure prediction, transmembrane topology prediction and protein fold recognition. More recent servers include DISOPRED for the prediction of protein dynamic disorder and DomPred for domain boundary prediction. These servers are available from our software home page at http://bioinf.cs.ucl.ac.uk/software.html.

引用

页码：W36 / W38

页数：3

共 14 条

[1] Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
Altschul, SF
Madden, TL
Schaffer, AA
Zhang, JH
Zhang, Z
Miller, W
Lipman, DJ
[J]. NUCLEIC ACIDS RESEARCH, 1997, 25 (17) : 3389 - 3402
[2] CAFASP3: The third critical assessment of fully automated structure prediction methods
Fischer, D
Rychlewski, L
Dunbrack, RL
Ortiz, AR
Elofsson, A
[J]. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2003, 53 : 503 - 516
[3] A MODEL RECOGNITION APPROACH TO THE PREDICTION OF ALL-HELICAL MEMBRANE-PROTEIN STRUCTURE AND TOPOLOGY
JONES, DT
TAYLOR, WR
THORTON, JM
[J]. BIOCHEMISTRY, 1994, 33 (10) : 3038 - 3049
[4] GenTHREADER: An efficient and reliable protein fold recognition method for genomic sequences
Jones, DT
[J]. JOURNAL OF MOLECULAR BIOLOGY, 1999, 287 (04) : 797 - 815
[5] Protein secondary structure prediction based on position-specific scoring matrices
Jones, DT
[J]. JOURNAL OF MOLECULAR BIOLOGY, 1999, 292 (02) : 195 - 202
[6] A NEW APPROACH TO PROTEIN FOLD RECOGNITION
JONES, DT
TAYLOR, WR
THORNTON, JM
[J]. NATURE, 1992, 358 (6381) : 86 - 89
[7] Do transmembrane protein superfolds exist?
Jones, DT
[J]. FEBS LETTERS, 1998, 423 (03) : 281 - 285
[8] Rapid protein domain assignment from amino acid sequence using predicted secondary structure
Marsden, RL
McGuffin, LJ
Jones, DT
[J]. PROTEIN SCIENCE, 2002, 11 (12) : 2814 - 2824
[9] Improvement of the GenTHREADER method for genomic fold recognition
McGuffin, LJ
Jones, DT
[J]. BIOINFORMATICS, 2003, 19 (07) : 874 - 881
[10] The PSIPRED protein structure prediction server
McGuffin, LJ
Bryson, K
Jones, DT
[J]. BIOINFORMATICS, 2000, 16 (04) : 404 - 405

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