The Genomic Threading Database

被引：16

作者：

McGuffin, LJ ^{[1
]}

Street, S ^{[1
]}

Sorensen, SA ^{[1
]}

Jones, DT ^{[1
]}

机构：

[1] UCL, Dept Comp Sci, London WC1E 6BT, England

来源：

BIOINFORMATICS | 2004年 / 20卷 / 01期

基金：

英国生物技术与生命科学研究理事会;

关键词：

D O I：

10.1093/bioinformatics/btg387

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

The Genomic Threading Database currently contains structural annotations for the genomes of over 100 recently sequenced organisms. Annotations are carried out by using our modified GenTHREADER software and through implementing grid technology.

引用

页码：131 / 132

页数：2

共 9 条

[1] Gapped BLAST and PSI-BLAST: a new generation of protein database search programs [J].

Altschul, SF ;

Madden, TL ;

Schaffer, AA ;

Zhang, JH ;

Zhang, Z ;

Miller, W ;

Lipman, DJ .

NUCLEIC ACIDS RESEARCH, 1997, 25 (17) :3389-3402

[2] The Protein Data Bank [J].

Berman, HM ;

Westbrook, J ;

Feng, Z ;

Gilliland, G ;

Bhat, TN ;

Weissig, H ;

Shindyalov, IN ;

Bourne, PE .

NUCLEIC ACIDS RESEARCH, 2000, 28 (01) :235-242

[3] Open annotation offers a democratic solution to genome sequencing [J].

Hubbard, T ;

Birney, E .

NATURE, 2000, 403 (6772) :825-825

[4] GenTHREADER: An efficient and reliable protein fold recognition method for genomic sequences [J].

Jones, DT .

JOURNAL OF MOLECULAR BIOLOGY, 1999, 287 (04) :797-815

[5] Protein secondary structure prediction based on position-specific scoring matrices [J].

Jones, DT .

JOURNAL OF MOLECULAR BIOLOGY, 1999, 292 (02) :195-202

[6] PDBsum: summaries and analyses of PDB structures [J].

Laskowski, RA .

NUCLEIC ACIDS RESEARCH, 2001, 29 (01) :221-222

[7] Improvement of the GenTHREADER method for genomic fold recognition [J].

McGuffin, LJ ;

Jones, DT .

BIOINFORMATICS, 2003, 19 (07) :874-881

[8] The PSIPRED protein structure prediction server [J].

McGuffin, LJ ;

Bryson, K ;

Jones, DT .

BIOINFORMATICS, 2000, 16 (04) :404-405

[9]

MURZIN AG, 1995, J MOL BIOL, V247, P536, DOI 10.1016/S0022-2836(05)80134-2

← 1 →