Mitochondrial proteins and complexes in Leishmania and Trypanosoma involved in U-insertion/deletion RNA editing

被引:111
作者
Simpson, L [1 ]
Aphasizhev, R
Gao, GG
Kang, XD
机构
[1] Univ Calif Los Angeles, Dept Microbiol Immunol & Mol Genet, Los Angeles, CA 90095 USA
[2] Univ Calif Los Angeles, Howard Hughes Med Inst, Los Angeles, CA 90095 USA
关键词
editing; trypanosomes; RNA; L-complex;
D O I
10.1261/rna.5170704
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
A number of mitochondrial proteins have been identified in Leishmania sp. and Trypanosoma brucei that may be involved in U-insertion/deletion RNA editing. Only a few of these have yet been characterized sufficiently to be able to assign functional names for the proteins in both species, and most have been denoted by a variety of species-specific and laboratory-specific operational names, leading to a terminology confusion both within and outside of this field. In this review, we summarize the present status of our knowledge of the orthologous and unique putative editing proteins in both species and the functional motifs identified by sequence analysis and by experimentation. An online Supplemental sequence database (http://164.67.60.200/proteins/protsmini1.asp) is also provided as a research resource.
引用
收藏
页码:159 / 170
页数:12
相关论文
共 49 条
[1]   Association of guide RNA binding protein gBP21 with active RNA editing complexes in Trypanosoma brucei [J].
Allen, TE ;
Heidmann, S ;
Reed, R ;
Myler, PJ ;
Göringer, HU ;
Stuart, KD .
MOLECULAR AND CELLULAR BIOLOGY, 1998, 18 (10) :6014-6022
[2]   A tale of two TUTases [J].
Aphasizhev, R ;
Aphasizheva, I ;
Simpson, L .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2003, 100 (19) :10617-10622
[3]   A 100-kD complex of two RNA-binding proteins from mitochondria of Leishmania tarentolae catalyzes RNA annealing and interacts with several RNA editing components [J].
Aphasizhev, R ;
Aphasizheva, I ;
Nelson, RE ;
Simpson, L .
RNA, 2003, 9 (01) :62-76
[4]   Isolation of a U-insertion/deletion editing complex from Leishmania tarentolae mitochondria [J].
Aphasizhev, R ;
Aphasizheva, I ;
Nelson, RE ;
Gao, GH ;
Simpson, AM ;
Kang, XD ;
Falick, AM ;
Sbicego, S ;
Simpson, L .
EMBO JOURNAL, 2003, 22 (04) :913-924
[5]   Trypanosome mitochondrial 3′ terminal uridylyl transferase (TUTase):: The key enzyme in U-insertion/deletion RNA editing [J].
Aphasizhev, R ;
Sbicego, S ;
Peris, M ;
Jang, SH ;
Aphasizheva, I ;
Simpson, AM ;
Rivlin, A ;
Simpson, L .
CELL, 2002, 108 (05) :637-648
[6]   Isolation and characterization of a U-specific 3′-5′-exonuclease from mitochondria of Leishmania tarentolae [J].
Aphasizhev, R ;
Simpson, L .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2001, 276 (24) :21280-21284
[7]   Cloning and characterization of two guide RNA-binding proteins from mitochondria of Crithidia fasciculata:: gBP27, a novel protein, and gBP29, the orthologue of Trypanosoma brucei gBP21 [J].
Blom, D ;
van den Burg, J ;
Breek, CKD ;
Speijer, D ;
Muijsers, AO ;
Benne, R .
NUCLEIC ACIDS RESEARCH, 2001, 29 (14) :2950-2962
[8]  
Corell RA, 1996, MOL CELL BIOL, V16, P1410
[9]   Trypanosoma brucei U insertion and U deletion activities co-purify with an enzymatic editing complex but are differentially optimized [J].
Cruz-Reyes, J ;
Rusché, LN ;
Sollner-Webb, B .
NUCLEIC ACIDS RESEARCH, 1998, 26 (16) :3634-3639
[10]   Distinct functions of two RNA ligases in active Trypanosoma brucei RNA editing complexes [J].
Cruz-Reyes, J ;
Zhelonkina, AG ;
Huang, CE ;
Sollner-Webb, B .
MOLECULAR AND CELLULAR BIOLOGY, 2002, 22 (13) :4652-4660