Stromal gene expression defines poor-prognosis subtypes in colorectal cancer

被引:831
作者
Calon, Alexandre [1 ]
Lonardo, Enza [1 ]
Berenguer-Llergo, Antonio [1 ]
Espinet, Elisa [1 ]
Hernando-Momblona, Xavier [1 ]
Iglesias, Mar [2 ,3 ,4 ]
Sevillano, Marta [1 ]
Palomo-Ponce, Sergio [1 ]
Tauriello, Daniele V. F. [1 ]
Byrom, Daniel [1 ]
Cortina, Carme [1 ]
Morral, Clara [1 ]
Barcelo, Carles [1 ]
Tosi, Sebastien [1 ]
Riera, Antoni [1 ]
Attolini, Camille Stephan-Otto [1 ]
Rossell, David [1 ]
Sancho, Elena [1 ]
Batlle, Eduard [1 ,5 ]
机构
[1] Inst Res Biomed IRB Barcelona, Barcelona, Spain
[2] Hosp del Mar, Dept Pathol, Barcelona, Spain
[3] Hosp del Mar, Res Inst IMIM, Canc Res Program, Barcelona, Spain
[4] Univ Autonoma Barcelona, E-08193 Barcelona, Spain
[5] Inst Catalana Recerca & Estudis Avancats, Barcelona, Spain
关键词
GROWTH-FACTOR-BETA; HUMAN-COLON; TGF-BETA; STEM-CELL; MOLECULAR SUBTYPES; TUMOR-GROWTH; GENOME; RECEPTOR; TUMORIGENESIS; METASTASIS;
D O I
10.1038/ng.3225
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Recent molecular classifications of colorectal cancer (CRC) based on global gene expression profiles have defined subtypes displaying resistance to therapy and poor prognosis. Upon evaluation of these classification systems, we discovered that their predictive power arises from genes expressed by stromal cells rather than epithelial tumor cells. Bioinformatic and immunohistochemical analyses identify stromal markers that associate robustly with disease relapse across the various classifications. Functional studies indicate that cancer-associated fibroblasts (CAFs) increase the frequency of tumor-initiating cells, an effect that is dramatically enhanced by transforming growth factor (TGF)-beta signaling. Likewise, we find that all poor-prognosis CRC subtypes share a gene program induced by TGF-beta in tumor stromal cells. Using patient-derived tumor organoids and xenografts, we show that the use of TGF-beta signaling inhibitors to block the cross-talk between cancer cells and the microenvironment halts disease progression.
引用
收藏
页码:320 / U62
页数:13
相关论文
共 54 条
[1]  
[Anonymous], 1999, P ICONIP ANZIIS ANNE
[2]   Gene expression omnibus: Microarray data storage, submission, retrieval, and analysis [J].
Barrett, Tanya ;
Edgar, Ron .
DNA MICROARRAYS, PART B: DATABASES AND STATISTICS, 2006, 411 :352-369
[3]   Adaptive linear step-up procedures that control the false discovery rate [J].
Benjamini, Yoav ;
Krieger, Abba M. ;
Yekutieli, Daniel .
BIOMETRIKA, 2006, 93 (03) :491-507
[4]   A 5-gene classifier from the carcinoma-associated fibroblast transcriptomic profile and clinical outcome in colorectal cancer [J].
Berdiel-Acer, Mireia ;
Berenguer, Antoni ;
Sanz-Pamplona, Rebeca ;
Cuadras, Daniel ;
Sanjuan, Xavier ;
Jose Paules, Maria ;
Santos, Cristina ;
Salazar, Ramon ;
Moreno, Victor ;
Capella, Gabriel ;
Villanueva, Alberto ;
Mollevi, David G. .
ONCOTARGET, 2014, 5 (15) :6437-6452
[5]  
Böttinger EP, 1997, CANCER RES, V57, P5564
[6]   Semi-mechanistic modelling of the tumour growth inhibitory effects of LY2157299, a new type I receptor TGF-β kinase antagonist, in mice [J].
Bueno, Lorea ;
de Alwis, Dinesh P. ;
Pitou, Celine ;
Yingling, Jonathan ;
Lahn, Michael ;
Glatt, Sophie ;
Troconiz, Inaki F. .
EUROPEAN JOURNAL OF CANCER, 2008, 44 (01) :142-150
[7]   TGF-beta in CAF-mediated tumor growth and metastasis [J].
Calon, A. ;
Tauriello, D. V. F. ;
Batlle, E. .
SEMINARS IN CANCER BIOLOGY, 2014, 25 :15-22
[8]   Dependency of Colorectal Cancer on a TGF-β-Driven Program in Stromal Cells for Metastasis Initiation [J].
Calon, Alexandre ;
Espinet, Elisa ;
Palomo-Ponce, Sergio ;
Tauriello, Daniele V. F. ;
Iglesias, Mar ;
Virtudes Cespedes, Maria ;
Sevillano, Marta ;
Nadal, Cristina ;
Jung, Peter ;
Zhang, Xiang H. -F. ;
Byrom, Daniel ;
Riera, Antoni ;
Rossell, David ;
Mangues, Ramon ;
Massague, Joan ;
Sancho, Elena ;
Batlle, Eduard .
CANCER CELL, 2012, 22 (05) :571-584
[9]   A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3 [J].
Cingolani, Pablo ;
Platts, Adrian ;
Wang, Le Lily ;
Coon, Melissa ;
Tung Nguyen ;
Wang, Luan ;
Land, Susan J. ;
Lu, Xiangyi ;
Ruden, Douglas M. .
FLY, 2012, 6 (02) :80-92
[10]   EphB/EphrinB receptors and Wnt signaling in colorectal cancer [J].
Clevers, H ;
Batlle, E .
CANCER RESEARCH, 2006, 66 (01) :2-5