Construction, alignment and analysis of twelve framework physical maps that represent the ten genome types of the genus Oryza

被引：69

作者：

Kim, HyeRan ^{[1
]}

Hurwitz, Bonnie ^{[2
]}

Yu, Yeisoo ^{[1
]}

Collura, Kristi ^{[1
]}

Gill, Navdeep ^{[3
]}

SanMiguel, Phillip ^{[4
]}

Mullikin, James C. ^{[5
]}

Maher, Christopher ^{[6
]}

Nelson, William ^{[7
]}

Wissotski, Marina ^{[1
]}

Braidotti, Michele ^{[1
]}

Kudrna, David ^{[1
]}

Goicoechea, Jose Luis ^{[1
]}

Stein, Lincoln ^{[2
]}

Ware, Doreen ^{[2
,8
]}

Jackson, Scott A.

Soderlund, Carol ^{[7
]}

Wing, Rod A. ^{[1
]}

机构：

[1] Univ Arizona, Dept Plant Sci, Arizona Genom Inst, Tucson, AZ 85721 USA

[2] Cold Spring Harbor Lab, Cold Spring Harbor, NY 11724 USA

[3] Purdue Univ, Dept Agron, W Lafayette, IN 47907 USA

[4] Purdue Univ, Dept Hort, W Lafayette, IN 47907 USA

[5] NHGRI, Genome Technol Branch, NIH, Bethesda, MD 20892 USA

[6] SUNY Stony Brook, Dept Biomed Engn, Stony Brook, NY 11794 USA

[7] Univ Arizona, Arizona Genom Computat Lab, Tucson, AZ 85721 USA

[8] USDA ARS, NAA Plant, Soil & Nutr Lab, Res Unit, Ithaca, NY 14853 USA

来源：

GENOME BIOLOGY | 2008年 / 9卷 / 02期

关键词：

D O I：

10.1186/gb-2008-9-2-r45

中图分类号：

Q81 [生物工程学（生物技术）]; Q93 [微生物学];

学科分类号：

071005 ; 0836 ; 090102 ; 100705 ;

摘要：

We describe the establishment and analysis of a genus-wide comparative framework composed of 12 bacterial artificial chromosome fingerprint and end-sequenced physical maps representing the 10 genome types of Oryza aligned to the O. sativa ssp. japonica reference genome sequence. Over 932 Mb of end sequence was analyzed for repeats, simple sequence repeats, miRNA and single nucleotide variations, providing the most extensive analysis of Oryza sequence to date.

引用

页数：15

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