CARGO:: a web portal to integrate customized biological information

被引：12

作者：

Cases, Ildefonso ^{[2
]}

Pisano, David G. ^{[1
]}

Andres, Eduardo ^{[1
]}

Carro, Angel ^{[1
]}

Fernandez, Jose M.

Gomez-Lopez, Gonzalo ^{[1
]}

Rodriguez, Jose M.

Vera, Jaime F. ^{[2
]}

Valencia, Alfonso ^{[2
]}

Rojas, Ana M. ^{[2
]}

机构：

[1] Spanish Natl Canc Res CNIO, Bioinformat Unit, Struct Biol & Biocomp Programme, Madrid, Spain

[2] Spanish Natl Canc Res CNIO, SCOMPBio Grp, Madrid, Spain

来源：

NUCLEIC ACIDS RESEARCH | 2007年 / 35卷

关键词：

D O I：

10.1093/nar/gkm280

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

There is a huge quantity of information generated in Life Sciences, and it is dispersed in many databases and repositories. Despite the broad availability of the information, there is a great demand for methods that are able to look for, gather and display distributed data in a standardized and friendly way. CARGO (Cancer And Related Genes Online) is a configurable biological web portal designed as a tool to facilitate, integrate and visualize results from Internet resources, independently of their native format or access method. Through the use of small agents, called widgets, supported by a Rich Internet Application (RIA) paradigm based on AJAX, CARGO provides pieces of minimal, relevant and descriptive biological information. The tool is designed to be used by experimental biologists with no training in bioinformatics. In the current state, the system presents a list of human cancer genes. Available at http://cargo.bioinfo.cnio.es

引用

页码：W16 / W20

页数：5

共 16 条

[1] Automatic annotation of protein function based on family identification [J].

Abascal, F ;

Valencia, A .

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2003, 53 (03) :683-692

[2] Untitled [J].

Bateman, Alex .

NUCLEIC ACIDS RESEARCH, 2006, 34 :D1-D1

[3] Untitled [J].

Batemen, Alex .

NUCLEIC ACIDS RESEARCH, 2007, 35 :D1-D2

[4] The Protein Data Bank and the challenge of structural genomics [J].

Berman, HM ;

Bhat, TN ;

Bourne, PE ;

Feng, ZK ;

Gilliland, G ;

Weissig, H ;

Westbrook, J .

NATURE STRUCTURAL BIOLOGY, 2000, 7 (Suppl 11) :957-959

[5] cPath: open source software for collecting, storing, and querying biological pathways [J].

Cerami, Ethan G. ;

Bader, Gary D. ;

Gross, Benjamin E. ;

Sander, Chris .

BMC BIOINFORMATICS, 2006, 7 (1)

[6] The Distributed Annotation System [J].

Dowell, Robin D. ;

Jokerst, Rodney M. ;

Day, Allen ;

Eddy, Sean R. ;

Stein, Lincoln .

BMC BIOINFORMATICS, 2001, 2 (1)

[7]

Hamosh A, 2005, NUCLEIC ACIDS RES, V33, pD514

[8] A gene network for navigating the literature [J].

Hoffmann, R ;

Valencia, A .

NATURE GENETICS, 2004, 36 (07) :664-664

[9] Ensembl 2007 [J].

Hubbard, T. J. P. ;

Aken, B. L. ;

Beal, K. ;

Ballester, B. ;

Caccamo, M. ;

Chen, Y. ;

Clarke, L. ;

Coates, G. ;

Cunningham, F. ;

Cutts, T. ;

Down, T. ;

Dyer, S. C. ;

Fitzgerald, S. ;

Fernandez-Banet, J. ;

Graf, S. ;

Haider, S. ;

Hammond, M. ;

Herrero, J. ;

Holland, R. ;

Howe, K. ;

Johnson, N. ;

Kahari, A. ;

Keefe, D. ;

Kokocinski, F. ;

Kulesha, E. ;

Lawson, D. ;

Longden, I. ;

Melsopp, C. ;

Megy, K. ;

Meidl, P. ;

Overduin, B. ;

Parker, A. ;

Prlic, A. ;

Rice, S. ;

Rios, D. ;

Schuster, M. ;

Sealy, I. ;

Severin, J. ;

Slater, G. ;

Smedley, D. ;

Spudich, G. ;

Trevanion, S. ;

Vilella, A. ;

Vogel, J. ;

White, S. ;

Wood, M. ;

Cox, T. ;

Curwen, V. ;

Durbin, R. .

NUCLEIC ACIDS RESEARCH, 2007, 35 :D610-D617

[10] The human genome browser at UCSC [J].

Kent, WJ ;

Sugnet, CW ;

Furey, TS ;

Roskin, KM ;

Pringle, TH ;

Zahler, AM ;

Haussler, D .

GENOME RESEARCH, 2002, 12 (06) :996-1006

← 1 2 →