Minimal parameter implicit solvent model for ab initio electronic-structure calculations

被引:71
作者
Dziedzic, J. [1 ,4 ]
Helal, H. H. [2 ]
Skylaris, C. -K. [1 ]
Mostofi, A. A. [3 ]
Payne, M. C. [2 ]
机构
[1] Univ Southampton Highfield, Sch Chem, Southampton SO17 1BJ, Hants, England
[2] Univ Cambridge, Cavendish Lab, Condensed Matter Theory Grp, Cambridge CB3 0HE, England
[3] Univ London Imperial Coll Sci Technol & Med, Thomas Young Ctr Theory & Simulat Mat, London SW7 2AZ, England
[4] Gdansk Univ Technol, Fac Tech Phys & Appl Math, PL-80952 Gdansk, Poland
基金
英国工程与自然科学研究理事会;
关键词
MOLECULAR-DYNAMICS SIMULATIONS; DENSITY-FUNCTIONAL THEORY; SOLVATION FREE-ENERGIES; HYDRATION;
D O I
10.1209/0295-5075/95/43001
中图分类号
O4 [物理学];
学科分类号
070305 [高分子化学与物理];
摘要
We present an implicit solvent model for ab initio electronic-structure calculations which is fully self-consistent and is based on direct solution of the nonhomogeneous Poisson equation. The solute cavity is naturally defined in terms of an isosurface of the electronic density according to the formula of Fattebert and Gygi (J. Comput. Chem., 23 (2002) 662). While this model depends on only two parameters, we demonstrate that by using appropriate boundary conditions and dispersion-repulsion contributions, solvation energies obtained for an extensive test set including neutral and charged molecules show dramatic improvement compared to existing models. Our approach is implemented in, but not restricted to, a linear-scaling density functional theory (DFT) framework, opening the path for self-consistent implicit solvent DFT calculations on systems of unprecedented size, which we demonstrate with calculations on a 2615-atom protein-ligand complex. Copyright (C) EPLA, 2011
引用
收藏
页数:6
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