Low barrier kinetics: Dependence on observables and free energy surface

被引:32
作者
Ma, HR
Gruebele, M
机构
[1] Univ Illinois, Ctr Biophys & Compuatat Biol, Urbana, IL 61801 USA
[2] Univ Illinois, Dept Chem, Urbana, IL 61801 USA
[3] Univ Illinois, Dept Phys, Urbana, IL 61801 USA
关键词
Langevin dynamics; downhill folding; molecular time scale; free energy surface;
D O I
10.1002/jcc.20311
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Dynamics on free energy surfaces with high activation barriers are usually treated by few-state kinetics models, yielding characteristic rate coefficients and amplitudes depending on the connectivity of the states. When the barriers are low (< 3 kT), the assumption of instantaneous equilibration of the transition state, and hence, the few-state kinetics treatment, break down. Langevin dynamics is used here to explore the characteristic trends that occur in such cases, as a function of barrier height, number of barriers, dimensionality of the free energy surface, and switching functions that describe how probes vary from reactant to product. The result is a systematic phenomenological description of low barrier kinetics and dynamics. (c) 2005 Wiley Periodicals, Inc.
引用
收藏
页码:125 / 134
页数:10
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