Hexameric ring structure of the N-terminal domain of Mycobacterium tuberculosis DnaB helicase

被引:44
作者
Biswas, Tapan [1 ]
Tsodikov, Oleg V. [1 ]
机构
[1] Univ Michigan, Coll Pharm, Dept Med Chem, Ann Arbor, MI 48109 USA
关键词
crystal structure; DnaB helicase; primase; replication; tuberculosis;
D O I
10.1111/j.1742-4658.2008.06460.x
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 [生物化学与分子生物学]; 081704 [应用化学];
摘要
Hexameric DnaB helicase unwinds the DNA double helix during replication of genetic material in bacteria. DnaB is an essential bacterial protein; therefore, it is an important potential target for antibacterial drug discovery. We report a crystal structure of the N-terminal region of DnaB from the pathogen Mycobacterium tuberculosis (MtDnaBn), determined at 2.0 angstrom resolution. This structure provides atomic resolution details of formation of the hexameric ring of DnaB by two distinct interfaces. An extensive hydrophobic interface stabilizes a dimer of MtDnaBn by forming a four-helix bundle. The other, less extensive, interface is formed between the dimers, connecting three of them into a hexameric ring. On the basis of crystal packing interactions between MtDnaBn rings, we suggest a model of a helicase-primase complex that explains previously observed effects of DnaB mutations on DNA priming.
引用
收藏
页码:3064 / 3071
页数:8
相关论文
共 37 条
[1]
Structure of hexameric DnaB helicase and its complex with a domain of DnaG primase [J].
Bailey, Scott ;
Eliason, William K. ;
Steitz, Thomas A. .
SCIENCE, 2007, 318 (5849) :459-463
[2]
The crystal structure of the Thermus aquaticus DnaB helicase monomer [J].
Bailey, Scott ;
Eliason, William K. ;
Steitz, Thomas A. .
NUCLEIC ACIDS RESEARCH, 2007, 35 (14) :4728-4736
[3]
EXTENSIVE UNWINDING OF THE PLASMID TEMPLATE DURING STAGED ENZYMATIC INITIATION OF DNA-REPLICATION FROM THE ORIGIN OF THE ESCHERICHIA-COLI CHROMOSOME [J].
BAKER, TA ;
SEKIMIZU, K ;
FUNNELL, BE ;
KORNBERG, A .
CELL, 1986, 45 (01) :53-64
[4]
Mapping protein-protein interactions within a stable complex of DNA primase and DnaB helicase from Bacillus stearothermophilus [J].
Bird, LE ;
Pan, H ;
Soultanas, P ;
Wigley, DB .
BIOCHEMISTRY, 2000, 39 (01) :171-182
[5]
STRUCTURE AND FUNCTION OF ESCHERICHIA-COLI DNAB PROTEIN - ROLE OF THE N-TERMINAL DOMAIN IN HELICASE ACTIVITY [J].
BISWAS, SB ;
CHEN, PH ;
BISWAS, EE .
BIOCHEMISTRY, 1994, 33 (37) :11307-11314
[6]
Identification of a region of Escherichia coli DnaB required for functional interaction with DnaG at the replication fork [J].
Chang, P ;
Marians, KJ .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2000, 275 (34) :26187-26195
[7]
Regulation of bacterial priming and daughter strand synthesis through helicase-primase interactions [J].
Corn, Jacob E. ;
Berger, James M. .
NUCLEIC ACIDS RESEARCH, 2006, 34 (15) :4082-4088
[8]
Coot:: model-building tools for molecular graphics [J].
Emsley, P ;
Cowtan, K .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2004, 60 :2126-2132
[9]
Crystal structure of the N-terminal domain of the DnaB hexameric helicase [J].
Fass, D ;
Bogden, CE ;
Berger, JM .
STRUCTURE, 1999, 7 (06) :691-698
[10]
Unzipping mechanism of the double-stranded DNA unwinding by a hexameric helicase:: Quantitative analysis of the rate of the dsDNA unwinding, processivity and kinetic step-size of the Escherichia coli DnaB helicase using rapid quench-flow method [J].
Galletto, R ;
Jezewska, MJ ;
Bujalowski, W .
JOURNAL OF MOLECULAR BIOLOGY, 2004, 343 (01) :83-99