Deep learning-guided joint attenuation and scatter correction in multitracer neuroimaging studies

被引:49
作者
Arabi, Hossein [1 ]
Bortolin, Karin [1 ]
Ginovart, Nathalie [2 ,3 ]
Garibotto, Valentina [1 ,4 ]
Zaidi, Habib [1 ,4 ,5 ,6 ]
机构
[1] Geneva Univ Hosp, Div Nucl Med & Mol Imaging, Dept Med Imaging, Geneva, Switzerland
[2] Univ Geneva, Dept Psychiat, Geneva, Switzerland
[3] Univ Geneva, Dept Basic Neurosci, Geneva, Switzerland
[4] Univ Geneva, Geneva Neurosci Ctr, Geneva, Switzerland
[5] Univ Groningen, Univ Med Ctr Groningen, Dept Nucl Med & Mol Imaging, Groningen, Netherlands
[6] Univ Southern Denmark, Dept Nucl Med, Odense, Denmark
基金
瑞士国家科学基金会; 欧盟地平线“2020”;
关键词
attenuation correction; deep learning; neuroimaging tracers; PET; quantification; PSEUDO-CT IMAGES; ECHO-TIME; PET; GENERATION; COMPENSATION; CHALLENGES; CONTEXT;
D O I
10.1002/hbm.25039
中图分类号
Q189 [神经科学];
学科分类号
071006 ;
摘要
PET attenuation correction (AC) on systems lacking CT/transmission scanning, such as dedicated brain PET scanners and hybrid PET/MRI, is challenging. Direct AC in image-space, wherein PET images corrected for attenuation and scatter are synthesized from nonattenuation corrected PET (PET-nonAC) images in an end-to-end fashion using deep learning approaches (DLAC) is evaluated for various radiotracers used in molecular neuroimaging studies. One hundred eighty brain PET scans acquired using F-18-FDG, F-18-DOPA, F-18-Flortaucipir (targeting tau pathology), and F-18-Flutemetamol (targeting amyloid pathology) radiotracers (40 + 5, training/validation + external test, subjects for each radiotracer) were included. The PET data were reconstructed using CT-based AC (CTAC) to generate reference PET-CTAC and without AC to produce PET-nonAC images. A deep convolutional neural network was trained to generate PET attenuation corrected images (PET-DLAC) from PET-nonAC. The quantitative accuracy of this approach was investigated separately for each radiotracer considering the values obtained from PET-CTAC images as reference. A segmented AC map (PET-SegAC) containing soft-tissue and background air was also included in the evaluation. Quantitative analysis of PET images demonstrated superior performance of the DLAC approach compared to SegAC technique for all tracers. Despite the relatively low quantitative bias observed when using the DLAC approach, this approach appears vulnerable to outliers, resulting in noticeable local pseudo uptake and false cold regions. Direct AC in image-space using deep learning demonstrated quantitatively acceptable performance with less than 9% absolute SUV bias for the four different investigated neuroimaging radiotracers. However, this approach is vulnerable to outliers which result in large local quantitative bias.
引用
收藏
页码:3667 / 3679
页数:13
相关论文
共 40 条
[1]  
[Anonymous], 2017, WATER SUI, DOI DOI 10.3390/W9050348
[2]   Novel adversarial semantic structure deep learning for MRI-guided attenuation correction in brain PET/MRI [J].
Arabi, Hossein ;
Zeng, Guodong ;
Zheng, Guoyan ;
Zaidi, Habib .
EUROPEAN JOURNAL OF NUCLEAR MEDICINE AND MOLECULAR IMAGING, 2019, 46 (13) :2746-2759
[3]   Comparative study of algorithms for synthetic CT generation from MRI: Consequences for MRI-guided radiation planning in the pelvic region [J].
Arabi, Hossein ;
Dowling, Jason A. ;
Burgos, Ninon ;
Han, Xiao ;
Greer, Peter B. ;
Koutsouvelis, Nikolaos ;
Zaidi, Habib .
MEDICAL PHYSICS, 2018, 45 (11) :5218-5233
[4]   One registration multi-atlas-based pseudo-CT generation for attenuation correction in PET/MRI [J].
Arabi, Hossein ;
Zaidi, Habib .
EUROPEAN JOURNAL OF NUCLEAR MEDICINE AND MOLECULAR IMAGING, 2016, 43 (11) :2021-2035
[5]   Atlas-guided generation of pseudo-CT images for MRI-only and hybrid PET-MRI-guided radiotherapy treatment planning [J].
Arabi, Hossein ;
Koutsouvelis, Nikolaos ;
Rouzaud, Michel ;
Miralbell, Raymond ;
Zaidi, Habib .
PHYSICS IN MEDICINE AND BIOLOGY, 2016, 61 (17) :6531-6552
[6]   Magnetic resonance imaging-guided attenuation correction in whole-body PET/MRI using a sorted atlas approach [J].
Arabi, Hossein ;
Zaidi, Habib .
MEDICAL IMAGE ANALYSIS, 2016, 31 :1-15
[7]   Clinical Assessment of MR-Guided 3-Class and 4-Class Attenuation Correction in PET/MR [J].
Arabi, Hossein ;
Rager, Olivier ;
Alem, Asma ;
Varoquaux, Arthur ;
Becker, Minerva ;
Zaidi, Habib .
MOLECULAR IMAGING AND BIOLOGY, 2015, 17 (02) :264-276
[8]   Clinical validity of increased cortical uptake of amyloid ligands on PET as a biomarker for Alzheimer's disease in the context of a structured 5-phase development framework [J].
Chiotis, Konstantinos ;
Saint-Aubert, Laure ;
Boccardi, Marina ;
Gietl, Anton ;
Picco, Agnese ;
Varrone, Andrea ;
Garibotto, Valentina ;
Herholz, Karl ;
Nobili, Flavio ;
Nordberg, Agneta .
NEUROBIOLOGY OF AGING, 2017, 52 :214-227
[9]   Time-of-flight PET data determine the attenuation sinogram up to a constant [J].
Defrise, Michel ;
Rezaei, Ahmadreza ;
Nuyts, Johan .
PHYSICS IN MEDICINE AND BIOLOGY, 2012, 57 (04) :885-899
[10]   MR-Only Brain Radiation Therapy: Dosimetric Evaluation of Synthetic CTs Generated by a Dilated Convolutional Neural Network [J].
Dinkla, Anna M. ;
Wolterink, Jelmer M. ;
Maspero, Matteo ;
Savenije, Mark H. F. ;
Verhoeff, Joost J. C. ;
Seravalli, Enrica ;
Isgum, Ivana ;
Seevinck, Peter R. ;
van den Berg, Cornelis A. T. .
INTERNATIONAL JOURNAL OF RADIATION ONCOLOGY BIOLOGY PHYSICS, 2018, 102 (04) :801-812